From 8af83b2a8d865fafdf2086ee113940c18ca85d58 Mon Sep 17 00:00:00 2001 From: Cameron Pfiffer Date: Sat, 27 Jul 2019 18:41:04 -0400 Subject: [PATCH 1/3] Added a Chains constructor for a vector-of-vectors. --- src/chains.jl | 24 +++++++++++++++++++----- 1 file changed, 19 insertions(+), 5 deletions(-) diff --git a/src/chains.jl b/src/chains.jl index 12b7b48e..240f0319 100644 --- a/src/chains.jl +++ b/src/chains.jl @@ -14,17 +14,31 @@ const DEFAULT_MAP = Dict{Symbol, Vector{Any}}(:parameters => []) # # return Chains(val, parameter_names, start=start, thin=thin) # end - # +# Constructor to handle a vector of vectors. +function Chains(val::Vector{Vector{A}}, + parameter_names::Vector{String} = map(i->"Param$i", 1:length(first(val))), + name_map = copy(DEFAULT_MAP); + start::Int=1, + thin::Int=1, + evidence = missing, + info::NamedTuple=NamedTuple() +) where {A<:Union{Real, Union{Missing, Real}}} + println("It's working") + return Chains(Array(hcat(val...)'), parameter_names, name_map, start=start, + thin=thin, evidence=evidence, info=info) +end + +# Constructor to handle a 1D array. function Chains(val::AbstractArray{A,1}, parameter_names::Vector{String} = map(i->"Param$i", 1:size(val, 2)), name_map = copy(DEFAULT_MAP); start::Int=1, thin::Int=1, evidence = missing, - info=NamedTuple() + info::NamedTuple=NamedTuple() ) where {A<:Union{Real, Union{Missing, Real}}} - Chains(val[:,:,:], parameter_names, name_map, start=start, + return Chains(val[:,:,:], parameter_names, name_map, start=start, thin=thin, evidence=evidence, info=info) end @@ -35,7 +49,7 @@ function Chains(val::AbstractArray{A,2}, start::Int=1, thin::Int=1, evidence = missing, - info=NamedTuple() + info::NamedTuple=NamedTuple() ) where {A<:Union{Real, Union{Missing, Real}}} Chains(val[:,:,:], parameter_names, name_map, start=start, thin=thin, evidence=evidence, info=info) @@ -48,7 +62,7 @@ function Chains(val::AbstractArray{A,3}, start::Int=1, thin::Int=1, evidence = missing, - info=NamedTuple()) where {A<:Union{Real, Union{Missing, Real}}} + info::NamedTuple=NamedTuple()) where {A<:Union{Real, Union{Missing, Real}}} # If we received an array of pairs, convert it to a dictionary. if typeof(name_map) <: Array From 5ff7f48dd8c6951e2a706330c77aaf8e25f7f7ec Mon Sep 17 00:00:00 2001 From: Cameron Pfiffer Date: Sat, 27 Jul 2019 18:57:59 -0700 Subject: [PATCH 2/3] Removed Manifest.toml. --- Manifest.toml | 479 -------------------------------------------------- 1 file changed, 479 deletions(-) delete mode 100644 Manifest.toml diff --git a/Manifest.toml b/Manifest.toml deleted file mode 100644 index eadf2a9d..00000000 --- a/Manifest.toml +++ /dev/null @@ -1,479 +0,0 @@ -# This file is machine-generated - 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-[[WoodburyMatrices]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Test"] -git-tree-sha1 = "21772c33b447757ec7d3e61fcdfb9ea5c47eedcf" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.4.1" From 76f93b8b2200a615deecf1bbaae7efa75f70c881 Mon Sep 17 00:00:00 2001 From: Cameron Pfiffer Date: Sat, 27 Jul 2019 19:18:23 -0700 Subject: [PATCH 3/3] Increment version number. --- Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Project.toml b/Project.toml index afacfce5..409190d9 100644 --- a/Project.toml +++ b/Project.toml @@ -3,7 +3,7 @@ uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" keywords = ["markov chain monte carlo", "probablistic programming"] license = "MIT" desc = " Chain types and utility functions for MCMC simulations." -version = "0.3.10" +version = "0.3.11" [deps] AxisArrays = "39de3d68-74b9-583c-8d2d-e117c070f3a9"