From bfdc8f113e837532601cf700b37cb05118737a52 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:26:33 +0000
Subject: [PATCH 1/6] feat: Updated openoligo/scripts/server.py

---
 openoligo/scripts/server.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/openoligo/scripts/server.py b/openoligo/scripts/server.py
index 6ae0209..13e2426 100644
--- a/openoligo/scripts/server.py
+++ b/openoligo/scripts/server.py
@@ -176,7 +176,7 @@ async def update_a_synthesis_task(
 
     if sequence is not None:
         try:
-            seq_validator = ValidSeq()
+
             # seq_validator(sequence)
             task.sequence = sequence  # type: ignore
         except ValidationError as exc:

From 1dcac5eefc5de0b0dd221a9bb2d949ce8c1801a0 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:26:54 +0000
Subject: [PATCH 2/6] feat: Updated openoligo/api/models.py

---
 openoligo/api/models.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/openoligo/api/models.py b/openoligo/api/models.py
index 658957b..1341eab 100644
--- a/openoligo/api/models.py
+++ b/openoligo/api/models.py
@@ -8,6 +8,8 @@
 from typing import Optional
 
 from pydantic import BaseModel
+from pydantic import BaseModel
+# Existing import
 from tortoise import fields
 from tortoise.contrib.pydantic import pydantic_model_creator
 from tortoise.exceptions import ValidationError

From d61c5286c365b5c81ced711910d076afca87c9c2 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:27:07 +0000
Subject: [PATCH 3/6] feat: Updated openoligo/api/models.py

---
 openoligo/api/models.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/openoligo/api/models.py b/openoligo/api/models.py
index 1341eab..8edf7ba 100644
--- a/openoligo/api/models.py
+++ b/openoligo/api/models.py
@@ -49,6 +49,7 @@ class ReactantType(str, Enum):
 
 class InstrumentHealth(str, Enum):
     """Instrument health status"""
+    """Instrument health status"""
 
     OPERATIONAL = "Operational"
     DEGRADED = "Degraded"

From 6a0df1038a63316ad616d68b04d039b09550b3a9 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:27:21 +0000
Subject: [PATCH 4/6] feat: Updated openoligo/api/models.py

---
 openoligo/api/models.py | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/openoligo/api/models.py b/openoligo/api/models.py
index 8edf7ba..0254e94 100644
--- a/openoligo/api/models.py
+++ b/openoligo/api/models.py
@@ -200,6 +200,12 @@ class SynthesisTask(Model):
     )
     created_at = fields.DatetimeField(auto_now_add=True)
     started_at = fields.DatetimeField(null=True)
+    def public_method_one(self):
+        pass
+    
+    def public_method_two(self):
+        pass
+
     completed_at = fields.DatetimeField(null=True)
 
     log_file = fields.TextField(

From bd3147b9ae55798d7f3a43a4b3e8856f7a9d3bf1 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:27:50 +0000
Subject: [PATCH 5/6] feat: Updated openoligo/api/models.py

---
 openoligo/api/models.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/openoligo/api/models.py b/openoligo/api/models.py
index 0254e94..aaada6c 100644
--- a/openoligo/api/models.py
+++ b/openoligo/api/models.py
@@ -171,7 +171,7 @@ class Config:
         }
 
 
-def json_to_seq(raw_json: str | bytes) -> NucleotidesModel:
+def json_to_seq(raw_json: 'Union[str, bytes]') -> NucleotidesModel:
     """Convert json to a Nucleotide[]"""
     seq: NucleotidesModel = NucleotidesModel.parse_raw(raw_json)
     return seq

From 97be5a26f8c23681bf64147351ebeefd42825ac8 Mon Sep 17 00:00:00 2001
From: "sweep-ai[bot]" <128439645+sweep-ai[bot]@users.noreply.github.com>
Date: Wed, 10 Jan 2024 09:28:03 +0000
Subject: [PATCH 6/6] feat: Updated openoligo/api/models.py

---
 openoligo/api/models.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/openoligo/api/models.py b/openoligo/api/models.py
index aaada6c..72e8bbd 100644
--- a/openoligo/api/models.py
+++ b/openoligo/api/models.py
@@ -1,7 +1,7 @@
 """
 Tortoise ORM Models for the OpenOligo API
 """
-import json
+
 import re
 from dataclasses import dataclass
 from enum import Enum
@@ -23,6 +23,7 @@
 )
 
 from openoligo.seq import Seq
+import json
 
 
 class TaskStatus(str, Enum):