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results.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<title>Grassroots Infrastructure</title>
<!-- Bootstrap core CSS -->
<link href="vendor/bootstrap/css/bootstrap.min.css" rel="stylesheet">
<!-- Custom fonts for this template -->
<link href="vendor/font-awesome/css/font-awesome.min.css" rel="stylesheet" type="text/css">
<!-- Custom styles for this template -->
<link href="css/site.css" rel="stylesheet">
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-21666189-16"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag() {
dataLayer.push(arguments);
}
gtag('js', new Date());
gtag('config', 'UA-21666189-16');
</script>
<style>
/* Tabs styling */
.tabs {
list-style-type: none;
padding: 0;
margin: 0;
display: flex;
justify-content: center; /* Center tabs if they don't fill the entire width */
flex-wrap: wrap;
border-bottom: 2px solid #2C3E50; /* Visual separation */
}
.tabs li {
display: inline-block;
margin-right: 10px;
padding: 10px 15px;
background-color: #2C3E50;
color: #fff;
cursor: pointer;
border-radius: 5px 5px 0 0; /* Rounded corners on the top */
transition: background-color 0.3s ease; /* Interaction effect */
}
.tabs li.active, .tabs li:hover {
background-color: #1D2E40; /* Darker on hover/active */
}
.tabs li a {
color: inherit; /* Ensures anchor tags inherit the li color */
text-decoration: none; /* No underline */
}
/* Tab content styling */
.tab-content div {
display: none; /* Initially hide all content */
padding: 20px;
border: 1px solid #ddd;
background-color: #f9f9f9; /* Light background for readability */
margin-top: -1px; /* Align with tabs */
text-align: left;
}
.tab-content div p {
color: #2C3E50; /* Text color */
text-align: left;
}
.tab-content div.active {
display: block; /* Show active tab content */
}
/* Adjustments for smaller screens */
@media (max-width: 600px) {
.tabs {
flex-direction: column; /* Stack tabs vertically on small screens */
}
}
/* Section and explanatory text styling */
#header-section .explanatory-text h2, #header-section .explanatory-text p {
color: #2C3E50; /* Unified color for header section text */
margin-bottom: 20px; /* Space below the text */
}
.close-button {
color: #aaa;
float: right;
font-size: 28px;
font-weight: bold;
}
.close-button:hover,
.close-button:focus {
color: black;
text-decoration: none;
cursor: pointer;
}
#header-section .explanatory-text h2 {
font-size: 28px;
color: #2C3E50;
margin-bottom: 20px;
}
#header-section .explanatory-text p {
font-size: 20px;
color: #2C3E50;
margin-bottom: 30px;
}
.darker {
font-size: 18px; /* size of hyperlink text */
}
#services, #results {
padding-top: 0;
margin-top: 1;
}
#search-results {
width: 100%; /* Adjust this value as needed */
max-width: 1600px; /* Optional: sets a maximum width */
margin: 0 auto; /* Centers the box */
}
#resultsTabs, #tabContent {
width: 100%; /* Ensures they take the full width of #search-results */
}
#loadingSpinner {
display: none; /* Initially hidden */
justify-content: center; /* Center horizontally */
align-items: center; /* Center vertically */
position: fixed; /* Or absolute, depending on the use case */
top: 0;
left: 0;
width: 100%;
height: 100%;
background-color: rgba(255, 255, 255, 0.5); /* Optional: slight white overlay */
z-index: 1000; /* Ensure it's above other content */
}
.spinner {
border: 4px solid rgba(0, 0, 0, 0.1);
width: 50px;
height: 50px;
border-radius: 50%;
border-left-color: #09f;
animation: spin 1s ease infinite;
}
@keyframes spin {
0% {
transform: rotate(0deg);
}
100% {
transform: rotate(360deg);
}
}
.publication-item {
padding-bottom: 10px; /* Add some space at the bottom */
margin-bottom: 10px; /* Add additional space below the border */
border-bottom: 1px solid #ccc; /* Thin, faint grey line */
}
</style>
</head>
<body id="page-top">
<!-- Navigation -->
<nav class="navbar navbar-expand-lg navbar-light fixed-top" id="mainNav">
<div class="container">
<a class="navbar-brand js-scroll-trigger" href="#page-top"
style="text-transform: none ! important;">Grassroots
Infrastructure</a>
<button class="navbar-toggler navbar-toggler-right" type="button" data-toggle="collapse"
data-target="#navbarResponsive" aria-controls="navbarResponsive" aria-expanded="false"
aria-label="Toggle navigation">
Menu
<i class="fa fa-bars"></i>
</button>
<div class="collapse navbar-collapse" id="navbarResponsive">
<ul class="navbar-nav ml-auto">
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#services">Services</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#data">Data</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="docs/">Docs</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="dfw">DFW</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="service/search">Search</a>
</li>
</ul>
<img class="navbar-nav navbar-right" style="height:50px;margin-left:50px;" src="img/logo-white.png" />
</div>
</div>
</nav>
<!-- Search box -->
<section id="search-box" style="padding-top: 130px; padding-bottom: 20px;">
<div class="container">
<div class="row">
<div class="col-lg-8 mx-auto text-center">
<div class="search-box" style="border: 2px solid #2C3E50; padding: 20px; border-radius: 5px; background-color: rgba(255, 255, 255, 0.9); box-shadow: 0 4px 8px rgba(0, 0, 0, 0.1);">
<div class="search-box-title" style="text-align: left; margin-bottom: 15px;">
<h4 style="margin: 0; color: #2C3E50;">Grassroots Search</h4>
<p style="margin: 0; color: #2C3E50; font-size: 14px;">Explore our system</p>
</div>
<div class="row">
<div class="col-sm-8">
<input type="text" id="searchInput" class="form-control" placeholder="Enter search keyword...">
</div>
<div class="col-sm-4">
<select id="categorySelect" class="form-control">
<option value="All">All</option>
<option value="Dataset">Dataset</option>
<option value="Service">Service</option>
<option value="Field Trial">Field Trial</option>
<option value="Study">Study</option>
<option value="Location">Location</option>
<option value="MARTi Sample">MARTi Sample</option>
<option value="Programme">Programme</option>
<option value="Publication">Publication</option>
</select>
</div>
</div>
<button onclick="sendNewSearchRequest()" class="btn btn-primary" style="margin-top: 10px;">Search</button>
</div>
</div>
</div>
</div>
</section>
<!-- Search results Section -->
<header class="text-center" id="header-section">
<section class="success" id="services">
<div class="container">
<section id="results" style="padding-top: 5px;">
<div class="container">
<div class="row">
<div class="col-lg-12 mx-auto text-center">
<div id="search-results">
<div id="search-message"></div>
<div id="resultsTabs" class="tabs"></div>
<div id="tabContent" class="tab-content"></div>
</div>
</div>
</div>
</div>
</section>
<div id="loadingSpinner" style="display: none;">
<div class="spinner"></div>
</div>
</div>
</header>
<script>
function displayResults(data) {
window.publicationItemCount = 0;
window.DatasetItemCount = 0;
window.ProgrammeItemCount = 0;
const tabsContainer = document.getElementById('resultsTabs');
const contentContainer = document.getElementById('tabContent');
// Clear previous tabs and content
tabsContainer.innerHTML = '';
contentContainer.innerHTML = '';
if (data.results && data.results[0].metadata.total_hits > 0) {
const categoriesResults = {}; // Holds the results categorized by their type
// Group results by their category
data.results[0].results.forEach(result => {
const category = result.data.type_description || 'Other';
if (!categoriesResults[category]) {
categoriesResults[category] = [];
}
categoriesResults[category].push(result);
});
// Create tabs and contents for categories with results
Object.keys(categoriesResults).forEach((category, index) => {
const tab = document.createElement('li');
const link = document.createElement('a');
link.textContent = category;
link.href = `#tab-${index}`;
tab.appendChild(link);
tabsContainer.appendChild(tab);
const tabContent = document.createElement('div');
tabContent.id = `tab-${index}`;
categoriesResults[category].forEach(result => {
const item = document.createElement('p');
// Check if the category is 'Dataset' and customize the display
if (category === "Dataset") {
// Initialize content HTML string for the dataset item
let contentHTML = '';
// Append a horizontal rule before each dataset item except the first one
if (!window.DatasetItemCount) {
window.DatasetItemCount = 1; // Initialize if it doesn't exist
} else {
// Append a horizontal rule for subsequent items
contentHTML += `<hr style="border-top: 1px solid #ccc; margin-top: 10px; margin-bottom: 10px;">`;
window.DatasetItemCount++; // Increment for each item processed
}
const titleLink = `<a href="${result.data['so:url']}" target="_blank">${result.data['so:name']}</a>`;
const authorsList = result.data.authors ? `<i>${result.data.authors.join(', ')}</i>` : '';
const description = result.data['so:description'] ? result.data['so:description'] : 'No description available';
// Append the dataset-specific content with authors on a new line in Italics and the description on another line
contentHTML += `${titleLink}<br/>${authorsList}<br/>${description}`;
// Set the item's innerHTML
item.innerHTML = contentHTML;
}
else if (category === "Study") {
const studyLink = `https://grassroots.tools/fieldtrial/study/${result.data.id}`;
const titleLink = `<a href="${studyLink}" target="_blank">${result.data['so:name']}</a>`;
item.innerHTML = titleLink;
}
else if (category === "Field Trial") {
const studyLink = `https://grassroots.tools/fieldtrial/${result.data.id}`;
const titleLink = `<a href="${studyLink}" target="_blank">${result.data['so:name']}</a>`;
item.innerHTML = titleLink;
}
else if (category === "Programme") {
// Initialize content HTML string for the programme item
let contentHTML = '';
// Append a horizontal rule before each programme item except the first one
if (!window.ProgrammeItemCount) {
window.ProgrammeItemCount = 1; // Initialize if it doesn't exist
} else {
// Append a horizontal rule for subsequent items
contentHTML += `<hr style="border-top: 1px solid #ccc; margin-top: 10px; margin-bottom: 10px;">`;
window.ProgrammeItemCount++; // Increment for each item processed
}
let programmeLink = result.data['so:url'] ? result.data['so:url'] : '';
let principalInvestigator = result.data['principal_investigator'] ? result.data['principal_investigator']['so:name'] : '';
let titleLink = programmeLink ? `<a style="color:#18bc9c !important;" href="${programmeLink}" target="_blank">${result.data['so:name']}</a>` : `<i>${result.data['so:name']}</i>`;
// Append the rest of the programme-specific content
contentHTML += titleLink;
if (principalInvestigator) {
contentHTML += `<br/>Principal Investigator: <i>${principalInvestigator}</i><br/>`;
}
contentHTML += result.data['so:description'] ? result.data['so:description'] : '';
// Set the item's innerHTML
item.innerHTML = contentHTML;
}
else if (category === "Publication") {
let publicationLink = result.data['so:url'] ? result.data['so:url'] : '';
let authorsText = result.data['author'] ? result.data['author'] : 'Unknown Author'; // Directly use the 'author' string
let authors = authorsText.replace(/;/g, ','); // Replace semicolons with commas
let title = result.data['so:name'];
let description = result.data['so:description'] ? result.data['so:description'] : 'No description available';
// Initialize content HTML string for the publication item
let contentHTML = '';
//let contentHTML = '<div class="publication-item">'; // it does not work!
// Append a horizontal rule before each publication item except the first one
// Use a static variable to keep track of the item count
if (!window.publicationItemCount) {
window.publicationItemCount = 1; // Initialize if it doesn't exist
} else {
// Append a horizontal rule for subsequent items
contentHTML += `<hr style="border-top: 1px solid #ccc; margin-top: 10px; margin-bottom: 10px;">`;
window.publicationItemCount++; // Increment for each item processed
}
if (publicationLink) {
contentHTML += `<br/><a style="color:#18bc9c !important;" target="_blank" href="${publicationLink}">${title}</a><br/>`;
} else {
contentHTML += `<i>${title}</i><br/>`;
}
// Append authors in italics
contentHTML += `<i>${authors}</i><br/>`;
// Append description
contentHTML += `${description}<br/>`;
//contentHTML += '</div>'; // End publication item div
item.innerHTML = contentHTML;
}
else if (category === "MARTi Sample") {
let sampleLink = result.data['so:url'] ? result.data['so:url'] : '';
let title = result.data['so:name']; // Assuming this holds the sample title
let description = result.data['so:description'] ? result.data['so:description'] : 'No description available';
let siteName = result.data['site_name'] ? result.data['site_name'] : '';
// Initialize content HTML string for the MARTi Sample item
let contentHTML = '';
// Append title as a hyperlink
if (sampleLink) {
contentHTML += `<a style="color:#18bc9c !important;" href="${sampleLink}" target="_blank">${title}</a><br/>`;
}
contentHTML += `<i>${description}</i><br/>`;
// Append site name if available
if (siteName) {
contentHTML += `Site: ${siteName}`;
}
item.innerHTML = contentHTML;
}
else if (category === "Service") {
let title = result.data['service'] ? result.data['service'] : 'No Title Available'; // Assuming 'service' holds the title
let serviceName = result.data['so:name'] ? result.data['so:name'] : '';
let description = result.data['so:description'] ? result.data['so:description'] : 'No description available';
let payloadUri = result.data['payload'] ? encodeURIComponent(JSON.stringify(result.data['payload'])) : '';
let serviceLink = `https://grassroots.tools/service/payload/${payloadUri}`; // Construct the link using payloadUri
let contentHTML = '';
// Append title as a hyperlink
if (payloadUri) {
contentHTML += `<a style="color:#18bc9c !important;" class="newstyle_link" href="${serviceLink}" target="_blank">${title}</a><br/>`;
}
contentHTML += `<b>${serviceName}</b><br/>`;
contentHTML += `${description}<br/>`;
item.innerHTML = contentHTML;
}
else if (category === "Measured Variable") {
const title = result.data['so:name'];
const unitName = result.data.variable['so:name'];
const trait = result.data.trait['so:name'];
const traitDescription = result.data.trait['so:description'];
let contentHTML = `<strong>${title}</strong><br>`;
contentHTML += `Trait ontology name: ${unitName}<br>`;
contentHTML += `<i>${trait}</i>: ${traitDescription}`;
item.innerHTML = contentHTML;
}
else {
item.innerHTML = result.title; // Default display for other categories
}
tabContent.appendChild(item);
});
contentContainer.appendChild(tabContent);
link.addEventListener('click', function(e) {
e.preventDefault();
document.querySelectorAll('.tab-content div').forEach(div => div.style.display = 'none');
document.querySelectorAll('.tabs li a').forEach(a => a.classList.remove('active'));
tabContent.style.display = 'block';
link.classList.add('active');
});
// Automatically activate the first tab
if (index === 0) {
link.classList.add('active');
tabContent.style.display = 'block';
}
});
} else {
contentContainer.innerHTML = '<p>No results found.</p>';
}
}
document.addEventListener('DOMContentLoaded', function() {
const params = new URLSearchParams(window.location.search);
const keyword = params.get('keyword');
const category = params.get('category');
// Initialize the search fields with current search parameters, if any
document.getElementById('searchInput').value = keyword || '';
document.getElementById('categorySelect').value = category || 'All';
sendSearchRequest(keyword, category); // Call search on page load with current parameters
});
function sendSearchRequest(keyword, category) {
// Show the spinner
document.getElementById('loadingSpinner').style.display = 'block';
const categoryValue = category === "All" ? "<ANY>" : category;
let hasTimedOut = false;
var searchRequest = {
"services": [{
"start_service": true,
"so:alternateName": "search",
"parameter_set": {
"level": "simple",
"parameters": [
{ "param": "SS Keyword Search", "current_value": keyword },
{ "param": "SS Facet", "current_value": categoryValue },
{ "param": "SS Results Page Number", "current_value": 0 },
{ "param": "SS Results Page Size", "current_value": 500 }
]
}
}]
};
// Set a timeout limit for the search (e.g., 10 seconds)
const searchTimeout = setTimeout(() => {
hasTimedOut = true; // Indicate that the request has timed out
document.getElementById('loadingSpinner').style.display = 'none';
// Inform the user that the search took too long
document.getElementById('search-results').innerHTML = `<p>Search timed out. Please try again.</p>`;
}, 8000); // 10000 milliseconds = 10 seconds
//fetch('http://127.0.0.1:2000/grassroots/public_backend', {
fetch('https://grassroots.tools/beta/grassroots/public_backend', {
method: 'POST',
headers: {
'Content-Type': 'application/json',
},
body: JSON.stringify(searchRequest),
})
.then(response => response.json())
.then(data => {
clearTimeout(searchTimeout); // Cancel the timeout if the search completes in time
if (!hasTimedOut) { // Proceed only if there hasn't been a timeout
displayResults(data);
document.getElementById('loadingSpinner').style.display = 'none';
}
})
.catch((error) => {
clearTimeout(searchTimeout); // Ensure to clear the timeout
if (!hasTimedOut) { // Show error only if there hasn't been a timeout
console.error('Error:', error);
displayError(); // Function to display an error message
}
});
}
function sendNewSearchRequest() {
var keyword = document.getElementById('searchInput').value.trim();
var category = document.getElementById('categorySelect').value;
var messageElement = document.getElementById('search-message'); // Get the dedicated message element
// Clear any previous message
messageElement.innerHTML = '';
if (!keyword) {
// If keyword is empty, display a message in the dedicated message element and do not proceed with the search
messageElement.innerHTML = `<p>Please enter a search term.</p>`;
// Optionally, you might want to focus the search input field to prompt the user to type
document.getElementById('searchInput').focus();
} else {
// If there is a keyword, proceed with the search request
sendSearchRequest(keyword, category);
}
}
function displayError() {
document.getElementById('search-results').innerHTML = `<p>There was an error processing your search. Please try again.</p>`;
}
</script>
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<p style="text-align: left ! important;">Rob leads the <a
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group, he joined the Earlham Institute in
January 2010 and was involved in the development of EI's Laboratory Information
Management System (MISO) and the TGAC Browser. He has worked on solutions for data
visualisation, managing servers, genomic databases and bioinformatics tools.
Xingdong is
now working mainly on the Grassroots project as a research software engineer. He has
a
BSc in Computer Science from the University of Sheffield and a MSc in Software
Engineering from the University of York.</p>
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member
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joining the Earlham Institute in June 2014. He has a PhD in Cheminformatics from the
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mining
and visualisation projects in different scientific disciplines.
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member
of the Data Infrastructure group,
joining the Earlham Institute in 2022. He obtained his PhD from the School of
Mathematics at the University of Bristol, working on turbulence and optimization
techniques.
He continued working in fluid mechanics at Coventry University and
later moved to Barcelona as a postdoctoral researcher working at the
Catalan Institute of Nanoscience and Nanotechnology. He is interested in
code development, numerical simulations, optimisation, high performance computing
and data visualisation.
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