The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- add support for smart-seq2 data analysis
- add following tertiary analysis: Differential expression analysis
- fix plot size issue in report
- add following tertiary analysis: Cell type annotation
- add 'analysis parameters' for analysis sections in report
- add module 'Merging/integration of samples' for secondary analysis
Initial release of nf-core/eisca, created with the nf-core template. The pipeline including following analyses:
- Primary analysis:
- Quality control of raw reads
- Mapping reads and quantification
- Convert count matrix into Anndata and Securat objects
- Secondary analysis
- Single-cell quality control
- Cell filtering
- Clustering analysis