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I run KINC-nf with the following arguments:
nextflow run systemsgenetics/kinc-nf \ -r master \ -profile singularity,kamiak \ --input_dir "GEM.GEM.TPM_clean" \ --graph_name "Gala_Apple" \ --data_missing_val "NA" \ --similarity_clusmethod "gmm" \ --similarity_minsamp 12 \ --similarity_maxclus 6 \ --condtest_feat_tests "Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest" \ --condtest_feat_types "Days.Postharvest:ordinal" \ --max_cpus 100 \ --max_gpus 0
and the output log says that condtest will be ran:
condtest
cond-test enabled: true chunks: 4 feat_tests: Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest feat_types: Days.Postharvest:ordinal alpha: 0.001 power: 0.8
But condtest is not ran and KINC-nf completes without any errors:
[- ] process > import_emx - [- ] process > similarity_chunk - [- ] process > similarity_merge - [2d/ce094a] process > corrpower (GEM.GEM.TPM_clean) [100%] 1 of 1 ✔ [- ] process > condtest - [- ] process > extract - Completed at: 16-Oct-2022 19:38:07 Duration : 3h 32m 37s CPU hours : 3.5 Succeeded : 1
Request: if KINC-nf is not able to run condtest for some reason, it should fail and tell the user why it failed
The text was updated successfully, but these errors were encountered:
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I run KINC-nf with the following arguments:
and the output log says that
condtest
will be ran:But condtest is not ran and KINC-nf completes without any errors:
Request: if KINC-nf is not able to run
condtest
for some reason, it should fail and tell the user why it failedThe text was updated successfully, but these errors were encountered: