diff --git a/Readme.md b/Readme.md index 8808cda..22cfc6e 100644 --- a/Readme.md +++ b/Readme.md @@ -105,8 +105,8 @@ git clone git@github.com:SynthRAD2023/preprocessing.git The main file ``pre_process_tools.py`` is meant to: * Convert Dicom to nifti (MRI+CT); -* Resample CT to 1x1x1 (for brain); -* Register MR to CT (as a result MRI will also have 1x1x1 spacing) using Elastix; +* Resample CT to 1x1x1 for brain ad to 1x1x2.5 for pelvis; +* Register MR to CT (as a result MRI will also have 1x1x1 or 1x1x2.5 spacing) using Elastix; * Segment patient outline on MRI an dilate mask; * Crop MRI, CT and the mask with a small extra margin to the dilated mask; @@ -132,6 +132,7 @@ An example of a tag extraction is provided in the directory examples: * ``extract_tags_UMCG.py`` shows an example of how to use the above functions for a dataset containing multiple patients and images directly in python; * ``pre_process_batch_MR.sh`` contains instructions on how to call the above functions from the terminal. +Futher example of the code from two insititutions has been provided. N.B. this is intended as example of script, it should be adapted for your own use. ## Functions Descriptions ### Pre-processing: