add option to export annotated differences

[FreakyBytes]

Trac Ticket #30

component: code
owner: martin
reporter: martin
created: 2015-10-02 09:47:57
milestone:
type: task
version:
keywords:

to get the patch incl annotations

see also

• ​bives-core:#44
• bives-cellml:draw image of bives module dependencies #20
• bives-sbml:use improved version of prettyDouble #18

comment 1

time: 2015-11-08 17:22:52
author: Martin Scharm [email protected]

In None:

implement support for annotating differences using COMODI [see #30]

update to the latest version of the bives modules, which are able to annotate the diffs with terms from COMODI.

currently, diffs are annotated by default. however, we probably change the default behaviour in the near future.

flags for enabling/disabling the annotation featuers are yet to be implemented

comment 2

time: 2015-11-25 03:49:58
author: Martin Scharm [email protected]

In None:

update to latest bives version

this does not include annotations by default [see #30]

comment 3

time: 2015-11-25 03:50:00
author: Martin Scharm [email protected]

In None:

implemented --inclAnnotations [see #30]

--inclAnnotations includes annotations into the xml encoded diff

also wrote tests to verify the behaviour

comment 4

time: 2015-11-25 03:50:02
author: Martin Scharm [email protected]

In None:

add flag for separate annotations [see #30]

--separateAnnotations now outputs the annotations separately