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Streaming FASTA parser #10

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vgel opened this issue Jul 26, 2022 · 1 comment
Open

Streaming FASTA parser #10

vgel opened this issue Jul 26, 2022 · 1 comment
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@mkysel

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@vgel
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vgel commented Jul 26, 2022

Discussed in #9

Right now, the FASTA parser inhales the whole file and produces a Vec of records. For very large files, we might prefer a streaming API. Possible inspiration is https://github.com/raphlinus/pulldown-cmark
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vgel commented Jul 26, 2022

(also, once we have a streaming API, we can re-implement the Vec-based API in terms of it very easily)

@mkysel mkysel self-assigned this Dec 6, 2022
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