diff --git a/Changelog.md b/Changelog.md index acca4312..9413360e 100644 --- a/Changelog.md +++ b/Changelog.md @@ -1,5 +1,25 @@ # Biotrainer Changelog +## 09.06.2024 - Version 0.9.0 +### Maintenance +* Adding more extensive code documentation +* Optimizing imports +* Applying consistent file naming +* Updating dependencies. Note that `jupyter` was removed as a direct optional dependency. +You can always add it via `poetry add jupyter`. +* Adding simple differentiation between t5 and esm tokenizer and models in `embedders` module + +### Features +* Adding new `residues_to_value` protocol. +Similar to the residues_to_class protocol, +this protocol predicts a value for each sequence, using per-residue embeddings. It might, in some situations, outperform +the sequence_to_value protocol. + +### Bug fixes +* For `huggingface_transformer_embedder.py`, all special tokens are now always deleted from the final embedding +(e.g. first/last for esm1b, last for t5) + + ## 04.06.2024 - Version 0.8.4 ### Maintenance * Updating dependencies