diff --git a/DESCRIPTION b/DESCRIPTION index ab3fa034..4f0fc56b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: synapser Type: Package Title: R Language Bindings for Synapse API -Version: 2.1.0 -Date: 2024-07-31 +Version: 2.1.1 +Date: 2024-08-20 Authors@R: c( person("Dan", "Lu", role = c("aut", "cre"), email = "dan.lu@sagebase.org"), person("Tom", "Yu", role = c("aut"), email = "thomas.yu@sagebase.org"), diff --git a/Dockerfile b/Dockerfile index 99e19067..7d9385d3 100644 --- a/Dockerfile +++ b/Dockerfile @@ -9,4 +9,4 @@ RUN apt-get update && \ apt-get clean && \ rm -rf /var/lib/apt/lists/* -RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'http://cran.fhcrc.org'))" +RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'https://cloud.r-project.org'))" diff --git a/Dockerfile.rstudio b/Dockerfile.rstudio index cbfb9cac..cf564718 100644 --- a/Dockerfile.rstudio +++ b/Dockerfile.rstudio @@ -13,6 +13,6 @@ RUN apt-get update && \ # Must install synapser as rstudio since we are relying on # the rstudio user to login USER rstudio -RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'http://cran.fhcrc.org'))" +RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'https://cloud.r-project.org'))" # when starting the container, it must run as root USER root diff --git a/NEWS.md b/NEWS.md index 9cf8b38c..36cea730 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +## synapser 2.1.1 + +### Improvements +* Pinned `rjson` package version to 0.2.21 to support R versions older than 4.4.0. + ## synapser 2.1.0 ### Improvements diff --git a/README.Rmd b/README.Rmd index bd2af733..ebdc5b43 100644 --- a/README.Rmd +++ b/README.Rmd @@ -47,13 +47,13 @@ adding the [Sage Bionetworks R Archive Network (RAN)](http://ran.synapse.org/) t repository list, e.g.: ```{r, eval=F} -install.packages("synapser", repos=c("http://ran.synapse.org", "http://cran.fhcrc.org")) +install.packages("synapser", repos=c("http://ran.synapse.org", "https://cloud.r-project.org")) ``` Alternatively, edit your ~/.Rprofile and configure your default repositories: ```{r, eval=F} -options(repos=c("http://ran.synapse.org", "http://cran.fhcrc.org")) +options(repos=c("http://ran.synapse.org", "https://cloud.r-project.org")) ``` after which you may run install.packages without specifying the repositories: diff --git a/README.md b/README.md index 56318383..aded5ce1 100644 --- a/README.md +++ b/README.md @@ -38,14 +38,14 @@ repository list, e.g.: ```r -install.packages("synapser", repos=c("http://ran.synapse.org", "http://cran.fhcrc.org")) +install.packages("synapser", repos=c("http://ran.synapse.org", "https://cloud.r-project.org")) ``` Alternatively, edit your ~/.Rprofile and configure your default repositories: ```r -options(repos=c("http://ran.synapse.org", "http://cran.fhcrc.org")) +options(repos=c("http://ran.synapse.org", "https://cloud.r-project.org")) ``` after which you may run install.packages without specifying the repositories: diff --git a/docs/404.html b/docs/404.html index c766b764..cf5d0dd2 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ synapser - 2.1.0 + 2.1.1 @@ -119,7 +119,7 @@

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