We have drafted a modelling example of data coming from the EBI Gene Expression Atlas, which contains NGS and microarray experiments and reports computed results about differentially expressed genes (eg, computed via ANOVA) or sequence counts (eg, using TPM).
While there aren't many agriculture-related experiments in GXA, it provides data that are easy to compare across experiments and are associated to experiment and sample metadata.
- AHDB
- CerealsDB
- Grain Genes
- T3/Wheat