From 2838b76622eef76ea8288a99f09d4dd16ef99739 Mon Sep 17 00:00:00 2001
From: ecwood <wooderi@stanford.edu>
Date: Thu, 27 Jul 2023 15:25:06 -0700
Subject: [PATCH] #321 change filenames to reflect JSON Lines format of KEGG
 dump now

---
 kegg_json_to_kg_jsonl.py => kegg_jsonl_to_kg_jsonl.py | 0
 snakemake-config-var.yaml                             | 2 +-
 2 files changed, 1 insertion(+), 1 deletion(-)
 rename kegg_json_to_kg_jsonl.py => kegg_jsonl_to_kg_jsonl.py (100%)

diff --git a/kegg_json_to_kg_jsonl.py b/kegg_jsonl_to_kg_jsonl.py
similarity index 100%
rename from kegg_json_to_kg_jsonl.py
rename to kegg_jsonl_to_kg_jsonl.py
diff --git a/snakemake-config-var.yaml b/snakemake-config-var.yaml
index c6f56a34..e901c548 100644
--- a/snakemake-config-var.yaml
+++ b/snakemake-config-var.yaml
@@ -222,7 +222,7 @@ kegg_conversion_base: kegg_json_to_kg_jsonl
 kegg_output_base: kg2-kegg
 kegg_extraction_script: ${CODE_DIR}/${kegg_extraction_base}.sh
 kegg_extraction_log: ${BUILD_DIR}/${kegg_extraction_base}${test_suffix}.log
-kegg_input_file: ${BUILD_DIR}/kegg.json
+kegg_input_file: ${BUILD_DIR}/kegg.jsonl
 kegg_conversion_script: ${CODE_DIR}/${kegg_conversion_base}.py
 kegg_conversion_log: ${BUILD_DIR}/${kegg_conversion_base}${test_suffix}.log
 kegg_output_nodes_file: ${BUILD_DIR}/${kegg_output_base}${nodes_suffix}${test_suffix}.jsonl