From 75c15847c7db84617529433301baf52623e65696 Mon Sep 17 00:00:00 2001 From: marieALaporte Date: Wed, 31 Aug 2016 17:23:05 +0200 Subject: [PATCH 1/2] added the po-basic.obo --- Makefile | 4 +- po.obo | 2 +- po.owl | 2 +- subsets/po-basic.obo | 363 ++++++++++++++++++++++++++++++++----------- 4 files changed, 275 insertions(+), 96 deletions(-) diff --git a/Makefile b/Makefile index ebe4e9d..015813d 100644 --- a/Makefile +++ b/Makefile @@ -7,7 +7,7 @@ ONT=po ROBOT=robot all: po.obo po.owl -test: all +test: subsets/po-basic.obo release: all echo "build successful. Now commit and push the derived files and make a release here: " @@ -20,5 +20,5 @@ reasoner-report.txt: plant-ontology.obo owltools $(CAT) $< --run-reasoner -r elk -u > $@.tmp && egrep '(INFERENCE|UNSAT)' $@.tmp > $@ # TODO: switch to using robot -subsets/po-basic.obo: target/po-simple.obo +subsets/po-basic.obo: po.obo owltools $(CAT) $< --make-subset-by-properties BFO:0000050 // --set-ontology-id $(OBO)/po/subsets/po-basic.owl -o -f obo $@ diff --git a/po.obo b/po.obo index 21744e9..b0ab31a 100644 --- a/po.obo +++ b/po.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2016-08-30 +data-version: releases/2016-08-31 saved-by: cooperl subsetdef: Angiosperm "Term for angiosperms" subsetdef: Arabidopsis "Term used for Arabidopsis" diff --git a/po.owl b/po.owl index cae456d..67a145c 100644 --- a/po.owl +++ b/po.owl @@ -10,7 +10,7 @@ xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:po="http://purl.obolibrary.org/obo/po#"> - + CL part_of NCBITaxon:33090 CARO 1.2 diff --git a/subsets/po-basic.obo b/subsets/po-basic.obo index d9f2af9..79940db 100644 --- a/subsets/po-basic.obo +++ b/subsets/po-basic.obo @@ -1,7 +1,5 @@ format-version: 1.2 -date: 05:11:2015 15:37 -saved-by: meiera -auto-generated-by: OBO-Edit 2.3.1 +saved-by: cooperl subsetdef: Angiosperm "Term for angiosperms" subsetdef: Arabidopsis "Term used for Arabidopsis" subsetdef: Bryophytes "Term used for mosses, liverworts, and/or hornworts" @@ -35,7 +33,6 @@ synonym: "embrióforo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "胚本体 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:246 is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0000002 @@ -354,9 +351,10 @@ is_obsolete: true id: PO:0000025 name: root tip namespace: plant_anatomy -def: "The apical most portion of the root (PO:0009005) including the root apical meristem (PO:0020147) and root cap (PO:0020123)." [TAIR:Katica_Ilic] +def: "A cardinal organ part (PO:0025001) which is the apical portion of the root (PO:0009005), and includes the root apical meristem (PO:0020147) and root cap (PO:0020123)." [POC:cooperl, TAIR:Katica_Ilic] synonym: "punta de la raíz (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "根端 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:620 xref: PO_GIT:70 is_a: PO:0025001 ! cardinal organ part relationship: part_of PO:0009005 ! root @@ -368,6 +366,7 @@ namespace: plant_anatomy def: "The portion of the primary root including the meristem and root cap." [TAIR:Katica_Ilic] synonym: "punta de la raíz primaria (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次根端 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:620 is_a: PO:0000025 ! root tip relationship: part_of PO:0020127 ! primary root @@ -644,6 +643,8 @@ comment: If you are annotating to this term, please add an additional annotation synonym: "epidermis de la lámina de la hoja (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "葉身表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006016 ! leaf epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0020039 ! leaf lamina relationship: part_of PO:0020039 ! leaf lamina [Term] @@ -688,6 +689,8 @@ comment: If you are annotating to this term, please add an additional annotation synonym: "epidermis del pecíolo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "葉柄表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006016 ! leaf epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0020038 ! petiole relationship: part_of PO:0020038 ! petiole [Term] @@ -1362,6 +1365,8 @@ synonym: "fibra del xilema (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolf synonym: "木部繊維細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:443 is_a: PO:0025407 ! plant fiber cell +intersection_of: PO:0025407 ! plant fiber cell +intersection_of: part_of PO:0005352 ! xylem relationship: part_of PO:0005352 ! xylem [Term] @@ -1678,6 +1683,7 @@ name: vascular leaf anlagen formation stage namespace: plant_structure_development_stage def: "A vascular leaf initiation stage (PO:0007040) during which the vascular leaf founder cells (PO:0025592) of the shoot apical meristem (PO:0020148) form a vascular leaf anlagen (PO:0025431)." [POC:Brian_Atkinson, POC:Laurel_Cooper, TAIR:Katica_Ilic] comment: The initial stage of leaf development when cells in the shoot apical meristem (PO:0020148) are already determined to form a vascular leaf primordium (PO:0000017), but the primordium is not yet morphologically distinguishable. +synonym: "leaf stage P0" RELATED [GRO:0007161] synonym: "P0 stage" RELATED [] synonym: "vascular leaf founder cell formation stage" EXACT [] xref: PO_GIT:560 @@ -1696,6 +1702,7 @@ id: PO:0001005 name: A archesporial cells visible stage namespace: plant_structure_development_stage def: "An initial stage during which archesporial cells arise in four corners of L2 layer. Change in shape of primordia to more oval." [TAIR:Katica_Ilic] +synonym: "stamen stage ST1" RELATED [GRO:0007211] xref: PO_GIT:539 is_a: PO:0001004 ! anther development stage @@ -1734,6 +1741,15 @@ name: D pollen mother cell meiosis stage namespace: plant_structure_development_stage def: "Stage during which pollen mother cells undergo meiosis to form tetrads of microspores." [TAIR:Katica_Ilic] synonym: "pollen stage 4 in Arabidopsis" RELATED [] +synonym: "stamen stage ST4" RELATED [GRO:0007213] +synonym: "stamen stage ST5" RELATED [GRO:0007212] +synonym: "stamen stage ST5-1" RELATED [GRO:0007217] +synonym: "stamen stage ST5-2" RELATED [GRO:0007218] +synonym: "stamen stage ST5-3" RELATED [GRO:0007219] +synonym: "stamen stage ST5-4" RELATED [GRO:0007220] +synonym: "stamen stage ST5-5" RELATED [GRO:0007221] +synonym: "stamen stage ST5-6" RELATED [GRO:0007222] +synonym: "stamen stage ST5-7" RELATED [GRO:0007223] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -1761,6 +1777,7 @@ name: G early unicellular microspore stage namespace: plant_structure_development_stage def: "Stage of microgametophyte development during which the microspores round up and small vacuoles appear in their cytoplasm. The microspore walls thicken due to the formation of the exine." [TAIR:Katica_Ilic] synonym: "pollen stage 6 in Arabidopsis" RELATED [] +synonym: "stamen stage ST6-1" RELATED [GRO:0007226] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -1770,6 +1787,7 @@ name: H late unicellular microspore stage namespace: plant_structure_development_stage def: "Stage of microgametophyte development during which a large vacuole is formed in each microspore causing a rapid increase in size and a displacement of the nucleus to one side." [TAIR:Katica_Ilic] synonym: "pollen stage 7 in Arabidopsis" RELATED [] +synonym: "stamen stage ST6-1" RELATED [GRO:0007226] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -1779,6 +1797,7 @@ name: I first mitotic division stage namespace: plant_structure_development_stage def: "Stage of microgametophyte development during which the asymmetric, first mitotic division of the microspores occurs producing a large vegetative cell and small generative cell, located near pollen wall." [TAIR:Katica_Ilic] synonym: "pollen stage 8 in Arabidopsis" RELATED [] +synonym: "stamen stage ST6-2" RELATED [GRO:0007228] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -1789,6 +1808,7 @@ namespace: plant_structure_development_stage def: "A pollen development stage (PO:0001007) during which the generative cell (PO:0020097) undergoes mitotic division to form two male gametes, the pollen sperm cells (PO:0025121)." [POC:Laurel_Cooper, TAIR:Katica_Ilic] comment: In taxa with mature two-celled pollen (PO:0025281), the second mitotic division takes place after pollen germination (GO:0009846), in the germinating pollen tube cell (PO:0025195). Note: This term overlaps with the GO BP term: generative cell mitosis (GO:0055047): The process in which the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells. synonym: "pollen stage 9 in Arabidopsis" RELATED [] +synonym: "stamen stage ST6-4" RELATED [GRO:0007229] synonym: "tricellular pollen development stage" EXACT [] synonym: "tricellular pollen stage" EXACT [] xref: PO_GIT:509 @@ -1801,6 +1821,7 @@ namespace: plant_structure_development_stage def: "Stage of microgametophyte development during which the pollen reaches mature stage and desiccates." [TAIR:Katica_Ilic] comment: Mature pollen stages is reached at three-celled pollen in some angiosperms (maize, rice and Arabidopsis), while in others, the maturepollen has two haploid cells (tobacco, snapdragon). synonym: "pollen stage 10 in Arabidopsis" RELATED [] +synonym: "stamen stage ST6-5" RELATED [GRO:0007230] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -1818,6 +1839,7 @@ id: PO:0001018 name: B formation of primary parietal and sporogenous cells stage namespace: plant_structure_development_stage def: "Stage during which the primary parietal and primary sporogenous layers are derived from archesporial cells." [TAIR:Katica_Ilic] +synonym: "stamen stage ST2" RELATED [GRO:0007214] xref: PO_GIT:539 is_a: PO:0001004 ! anther development stage @@ -1827,6 +1849,7 @@ name: vascular leaf primordium formation stage namespace: plant_structure_development_stage def: "A vascular leaf initiation stage (PO:0001051) during which a vascular leaf primordium (PO:0000017) forms in the peripheral zone (PO:0000225) of the vegetative shoot apical meristem (PO:0020148)." [POC:Laurel_Cooper, TAIR:Katica_Ilic] comment: The vascular leaf primordium (PO:0000017) develops from the vascular leaf anlagen (PO:0025431). +synonym: "leaf stage P1" RELATED [GRO:0007164] synonym: "P1 stage" RELATED [] xref: OBO-SF2_PO:561 is_a: PO:0001051 ! vascular leaf initiation stage @@ -1836,6 +1859,7 @@ id: PO:0001020 name: hood-shaped primordium stage namespace: plant_structure_development_stage def: "Stage of leaf development when a hood-shaped primordium is formed, partially enclosing P1 and SAM, as in Poaceae." [POC:Brian_Atkinson, TAIR:Katica_Ilic] +synonym: "leaf stage P2" RELATED [GRO:0007163] synonym: "P2 stage" RELATED [] xref: PO_GIT:564 is_a: PO:0001052 ! vascular leaf expansion stage @@ -1845,6 +1869,7 @@ id: PO:0001021 name: formation of ligule primordium stage namespace: plant_structure_development_stage def: "A vascular leaf expansion stage (PO:0001052) when conical P3 leaf completely encloses SAM, and the ligule (PO:0020105) primordium is visible." [POC:Brian_Atkinson, TAIR:Katica_Ilic] +synonym: "leaf stage P3" RELATED [GRO:0007166] synonym: "P3 stage" RELATED [] xref: PO_GIT:563 is_a: PO:0001052 ! vascular leaf expansion stage @@ -1854,6 +1879,7 @@ id: PO:0001023 name: rapid elongation of vascular leaf lamina stage namespace: plant_structure_development_stage def: "A vascular leaf expansion stage (PO:0001052) during which a rapid elongation of the leaf lamina (PO:0020039) occurs." [POC:Brian_Atkinson, TAIR:Katica_Ilic] +synonym: "leaf stage P4" RELATED [GRO:0007162] synonym: "P4 stage" RELATED [] xref: PO_GIT:565 is_a: PO:0001052 ! vascular leaf expansion stage @@ -1864,6 +1890,7 @@ name: rapid elongation of leaf sheath stage namespace: plant_structure_development_stage def: "A vascular leaf expansion stage (PO:0001052) during which a rapid elongation of the leaf sheath (PO:0020104) occurs." [POC:Laurel_Cooper, TAIR:Katica_Ilic] comment: Occurs in the Poaceae. +synonym: "leaf stage P5" RELATED [GRO:0007165] synonym: "P5 stage" RELATED [] xref: PO_GIT:566 is_a: PO:0001052 ! vascular leaf expansion stage @@ -1904,6 +1931,7 @@ id: PO:0001029 name: E tetrad stage namespace: plant_structure_development_stage def: "Stage immediately following meiosis, during which the tetrads of microspores are still hold together, enclosed by the callose wall." [TAIR:Katica_Ilic] +synonym: "stamen stage ST5-8" RELATED [GRO:0007224] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -2002,6 +2030,7 @@ id: PO:0001047 name: lemma development stage namespace: plant_structure_development_stage def: "A phyllome development stage (PO:0025579) that has as a primary participant a lemma (PO:0009037)." [GR:Anuradha_Pujar, POC:Felipe_Zapata, POC:Laura_Moore] +synonym: "spikelet stage SP3" RELATED [GRO:0007204] xref: PO_GIT:548 is_a: PO:0025579 ! phyllome development stage relationship: part_of PO:0007600 ! floral organ differentiation stage @@ -2011,6 +2040,7 @@ id: PO:0001048 name: palea development stage namespace: plant_structure_development_stage def: "A phyllome development stage (PO:0025579) that has as a primary participant a palea (PO:0009038)." [GR:Anuradha_Pujar, POC:Felipe_Zapata, POC:Laura_Moore] +synonym: "spikelet stage SP4" RELATED [GRO:0007207] xref: PO_GIT:548 is_a: PO:0025579 ! phyllome development stage relationship: part_of PO:0007600 ! floral organ differentiation stage @@ -2020,6 +2050,7 @@ id: PO:0001049 name: lodicule development stage namespace: plant_structure_development_stage def: "A phyllome development stage (PO:0025579) that has as a primary participant a lodicule (PO:0009036)." [GR:Anuradha_Pujar, POC:Felipe_Zapata, POC:Laura_Moore] +synonym: "spikelet stage SP5" RELATED [GRO:0007203] xref: PO_GIT:548 is_a: PO:0025579 ! phyllome development stage relationship: part_of PO:0007600 ! floral organ differentiation stage @@ -2030,6 +2061,7 @@ name: leaf development stage namespace: plant_structure_development_stage alt_id: PO:0007040 def: "A phyllome development stage (PO:0025579) during which the development of vascular leaves (PO:0009025) and non-vascular leaves (PO:0025075) occurs." [POC:Brian_Atkinson, POC:curators, TAIR:Tanya_Berardini] +synonym: "leaf development" RELATED [GRO:0007138] synonym: "leaf development in Arabidopsis" RELATED [] xref: PO_GIT:555 is_a: PO:0025579 ! phyllome development stage @@ -2060,6 +2092,7 @@ name: vascular leaf post-expansion stage namespace: plant_structure_development_stage def: "A vascular leaf development stage (PO:0025570) that begins when the vascular leaf (PO:0009025) is fully expanded and ends with the onset of the vascular leaf senescence stage (PO:0001054)." [POC:Brian_Atkinson, TAIR:Katica_Ilic] synonym: "fully expanded leaf stage in Arabidopsis" RELATED [] +synonym: "leaf stage PX" RELATED [GRO:0007167] xref: PO_GIT:558 is_a: PO:0025570 ! vascular leaf development stage @@ -2107,6 +2140,7 @@ id: PO:0001059 name: J bicellular pollen stage namespace: plant_structure_development_stage def: "Stage of microgametophyte development during which the small generative cell moves inward, becoming completely surrounded by the cytoplasm of the vegetative cell." [TAIR:Katica_Ilic] +synonym: "stamen stage ST6-3" RELATED [GRO:0007227] xref: PO_GIT:509 is_a: PO:0001007 ! pollen development stage @@ -2179,6 +2213,8 @@ subset: Arabidopsis subset: Maize subset: Poaceae subset: Rice +synonym: "embryo stage EM10" RELATED [GRO:0007177] +synonym: "embryo stage EM9" RELATED [GRO:0007176] synonym: "mature (stage) in Arabidopsis" RELATED [] xref: PO_GIT:400 is_a: PO:0007631 ! plant embryo development stage @@ -2188,6 +2224,7 @@ id: PO:0001083 name: inflorescence development stage namespace: plant_structure_development_stage def: "A reproductive shoot system development stage (PO:0025530) that has as primary participant a inflorescence (PO:0009049)." [POC:Laurel_Cooper] +synonym: "panicle development" RELATED [GRO:0007157] xref: PO_GIT:517 is_a: PO:0025530 ! reproductive shoot system development stage @@ -2201,6 +2238,7 @@ subset: Angiosperm subset: Maize subset: Poaceae subset: Rice +synonym: "embryo stage EM5" RELATED [GRO:0007169] synonym: "SAM and radicle formation stage" RELATED [] xref: PO_GIT:400 is_a: PO:0007631 ! plant embryo development stage @@ -2215,6 +2253,7 @@ subset: Angiosperm subset: Arabidopsis subset: Maize subset: Rice +synonym: "embryo stage EM6" RELATED [GRO:0007172] xref: PO_GIT:400 is_a: PO:0007631 ! plant embryo development stage @@ -2231,6 +2270,7 @@ name: plant zygote stage namespace: plant_structure_development_stage def: "A sporophyte development stage (PO:0007134) that occurs during the interval between fertilization and the first cell division of the plant zygote (PO:0000423)." [POC:curators] comment: Precedes the sporophyte vegetative stage (PO:0007134). Refers to the GO biological process term fertilization (GO:0009566). +synonym: "embryo stage EM1" RELATED [GRO:0007168] synonym: "one cell stage" RELATED [] synonym: "zygote in Arabidopsis" RELATED [] synonym: "zygote stage" BROAD [] @@ -2273,6 +2313,7 @@ subset: Maize subset: Poaceae subset: Rice synonym: "eight-celled stage in Arabidopsis" RELATED [] +synonym: "embryo stage EM2" RELATED [GRO:0007171] synonym: "two-celled stage in Arabidopsis" RELATED [] xref: PO_GIT:400 is_a: PO:0007631 ! plant embryo development stage @@ -2289,6 +2330,8 @@ subset: Maize subset: Poaceae subset: Rice synonym: "dermatogen stage in Arabidopsis" RELATED [] +synonym: "embryo stage EM3" RELATED [GRO:0007170] +synonym: "embryo stage EM4" RELATED [GRO:0007173] synonym: "globular stage in Arabidopsis" RELATED [] synonym: "late globular stage in Arabidopsis" RELATED [] synonym: "mid-globular stage in Arabidopsis" RELATED [] @@ -2354,7 +2397,6 @@ synonym: "embryonic basal cell" EXACT [] synonym: "胚基底細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:281 is_a: PO:0025028 ! embryo plant cell -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0002003 @@ -2748,6 +2790,7 @@ id: PO:0004501 name: gynoecium differentiation and expansion stage namespace: plant_structure_development_stage def: "Stage of gynoecium development defined by differentiation and expansion of carpels." [TAIR:Katica_Ilic] +synonym: "ovule stage OV1" RELATED [GRO:0007181] is_a: PO:0007606 ! gynoecium development stage [Term] @@ -2936,6 +2979,8 @@ synonym: "phloem fiber" EXACT [] synonym: "師部繊維 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:443 is_a: PO:0025407 ! plant fiber cell +intersection_of: PO:0025407 ! plant fiber cell +intersection_of: part_of PO:0005417 ! phloem relationship: part_of PO:0005417 ! phloem [Term] @@ -3004,6 +3049,8 @@ synonym: "wood parenchyma cell" EXACT [] synonym: "二次木部柔組織細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:456 is_a: PO:0000074 ! parenchyma cell +intersection_of: PO:0000074 ! parenchyma cell +intersection_of: part_of PO:0004532 ! secondary xylem parenchyma relationship: part_of PO:0004532 ! secondary xylem parenchyma [Term] @@ -3017,6 +3064,8 @@ synonym: "célula parenquimática axial de la madera (Spanish)" EXACT Span synonym: "軸方向二次木部柔組織細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:456 is_a: PO:0004525 ! secondary xylem parenchyma cell +intersection_of: PO:0004525 ! secondary xylem parenchyma cell +intersection_of: part_of PO:0004533 ! axial secondary xylem parenchyma relationship: part_of PO:0004533 ! axial secondary xylem parenchyma [Term] @@ -3030,6 +3079,8 @@ synonym: "ray wood parenchyma cell" EXACT [] synonym: "放射状二次木部柔組織細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:456 is_a: PO:0004525 ! secondary xylem parenchyma cell +intersection_of: PO:0004525 ! secondary xylem parenchyma cell +intersection_of: part_of PO:0004534 ! ray secondary xylem parenchyma relationship: part_of PO:0004534 ! ray secondary xylem parenchyma [Term] @@ -3090,6 +3141,8 @@ synonym: "wood parenchyma" EXACT [] synonym: "二次木部柔組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:455 is_a: PO:0005421 ! parenchyma +intersection_of: PO:0005421 ! parenchyma +intersection_of: part_of PO:0005848 ! secondary xylem relationship: part_of PO:0005848 ! secondary xylem [Term] @@ -3102,6 +3155,8 @@ synonym: "parénquima axial de la madera (Spanish)" EXACT Spanish [POC:Maria_ synonym: "軸方向二次木部柔組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:455 is_a: PO:0004532 ! secondary xylem parenchyma +intersection_of: PO:0004532 ! secondary xylem parenchyma +intersection_of: part_of PO:0025410 ! axial system relationship: part_of PO:0025410 ! axial system [Term] @@ -3116,6 +3171,8 @@ synonym: "ray wood parenchyma" EXACT [] synonym: "放射状二次木質部柔組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:455 is_a: PO:0004532 ! secondary xylem parenchyma +intersection_of: PO:0004532 ! secondary xylem parenchyma +intersection_of: part_of PO:0025411 ! ray system relationship: part_of PO:0025411 ! ray system [Term] @@ -3210,7 +3267,7 @@ is_a: PO:0025029 ! shoot axis id: PO:0004543 name: shoot axis tuber namespace: plant_anatomy -def: "A tuber (PO:0025522) that develops from a branch (PO:0025073)." [POC:curators] +def: "A shoot axis (PO:0025029) that develops from a branch (PO:0025073) and is radially enlarged for storage." [PO:cooperl, POC:curators] comment: Functions in storage of photosynthate metabolites. This term should be used for tubers derived from branches, as found in Solanum spp. (e.g. potato) or Dioscorea spp. (e.g. yam) and other species. Use the term tuberous root tuber (PO:0025476) for tubers derived from roots, such as those found in Cassava, Ipomoea, or Hemerocallis. subset: Potato subset: reference @@ -3221,6 +3278,7 @@ synonym: "tubérculo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "tuber branch" EXACT [] synonym: "シュート軸塊茎 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:127 +is_a: PO:0025029 ! shoot axis is_a: PO:0025522 ! tuber [Term] @@ -3262,13 +3320,14 @@ is_a: PO:0004545 ! shoot-borne shoot system [Term] id: PO:0004547 -name: subterranean tuber +name: subterranean shoot axis tuber namespace: plant_anatomy -def: "A shoot axis tuber (PO:0004543) that develops below ground." [POC:curators] +def: "A shoot axis tuber (PO:0004543) that develops below ground." [PO:cooperl, POC:curators] comment: Functions in storage of photosynthate metabolites. This term should be used for tubers derived from branches, as found in Solanum spp. (e.g. potato) or Dioscorea spp. (e.g. yam) and other species. Use the term tuberous root tuber (PO:0025476) for tubers derived from roots, such as those found in Cassava, Ipomoea, or Hemerocallis. subset: Potato synonym: "tubérculo subterráneo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "地下塊茎 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:615 is_a: PO:0004543 ! shoot axis tuber [Term] @@ -3389,10 +3448,11 @@ relationship: part_of PO:0009001 ! fruit id: PO:0004708 name: scutellar node namespace: plant_anatomy -def: "A stem node that is the part of an embryo axis directly above the radicle where the scutellum is attached." [ISBN:0471244554] +def: "A stem node (PO:0020141) that is part of a plant embryo axis (PO:0019018) where the scutellum (PO:0020110) is attached." [ISBN:0471244554, PO:cooperl] comment: Found in grasses where no hypocotyl is present. The scutellar node may represent a reduction of the hypocotyl and cotyledonary node. synonym: "nodo escutelar (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "胚盤節 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:145 is_a: PO:0020141 ! stem node is_a: PO:0025099 ! embryo plant structure relationship: part_of PO:0019018 ! plant embryo axis @@ -3718,18 +3778,18 @@ consider: PO:0025272 id: PO:0005010 name: anther septum namespace: plant_anatomy -def: "A septum that is present in an anther dehiscence zone." [GR:Chih-Wei_Tung, GR:Pankaj_Jaiswal] +def: "A septum (PO:0000030) that is part of an anther dehiscence zone (PO:0005011)." [GR:Chih-Wei_Tung, GR:Pankaj_Jaiswal, PO:Cooperl] synonym: "anther dissepiment" BROAD [FNA:978c1c40-4dee-4bb1-99f6-b2360d1b77b4] synonym: "septo de la antera (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "葯隔壁 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000030 ! septum -relationship: part_of PO:0009061 ! androecium +relationship: part_of PO:0005011 ! anther dehiscence zone [Term] id: PO:0005011 name: anther dehiscence zone namespace: plant_anatomy -def: "A dehiscence zone that is part of an anther." [POC:curators] +def: "A dehiscence zone (PO:0025092) that is part of an anther (PO:0009066)." [POC:curators] comment: Extends along the entire length of the anther and is observed as an indentation between the locules of each theca. Upon anther maturation, cell separation within the dehiscence zone allows the anther wall to break open and pollen to be released. synonym: "zona de dehiscencia de la antera (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "開葯帯 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] @@ -3767,7 +3827,6 @@ synonym: "胚皮層 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:9 is_a: PO:0005708 ! cortex is_a: PO:0025233 ! portion of embryo plant tissue -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0005015 @@ -3779,7 +3838,6 @@ synonym: "胚内胚葉 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:10 is_a: PO:0000252 ! endodermis is_a: PO:0025233 ! portion of embryo plant tissue -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0005016 @@ -4803,6 +4861,8 @@ synonym: "foliage leaf epidermis" EXACT [] synonym: "phyllid epidermis" EXACT [] synonym: "葉表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0025034 ! leaf relationship: part_of PO:0025034 ! leaf [Term] @@ -4918,13 +4978,14 @@ relationship: part_of PO:0009037 ! lemma [Term] id: PO:0006033 -name: paleal apiculus +name: palea apiculus namespace: plant_anatomy -def: "A short, abrupt, flexible point present at the apex of the palea." [GR:Pankaj_Jaiswal] +def: "A cardinal organ part (PO:0025001) which is a short, abrupt, flexible point at the apex of the palea (PO:0009038)." [GR:Pankaj_Jaiswal, PO:cooperl] subset: reference synonym: "apículo de la palea (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "apiculus" RELATED [] synonym: "内頴頂端 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:627 xref: PO_GIT:70 is_a: PO:0025001 ! cardinal organ part relationship: part_of PO:0009038 ! palea @@ -4989,6 +5050,8 @@ def: "A portion of phyllome epidermis that is part of a sepal." [POC:curators] synonym: "epidermis del sépalo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "がく片表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009031 ! sepal relationship: part_of PO:0009031 ! sepal [Term] @@ -4999,6 +5062,8 @@ def: "A portion of phyllome epidermis (PO:0025157) that is part of a petal (PO:0 synonym: "epidermis del pétalo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "花弁表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009032 ! petal relationship: part_of PO:0009032 ! petal [Term] @@ -5165,6 +5230,8 @@ def: "A portion of stamen epidermis that is part of a filament." [POC:Ramona_Wal synonym: "epidermis del filamento (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "花糸表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025097 ! stamen epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009067 ! filament relationship: part_of PO:0009067 ! filament [Term] @@ -6049,11 +6116,12 @@ relationship: part_of PO:0020126 ! tassel inflorescence [Term] id: PO:0006325 -name: inflorescence node +name: inflorescence axis node namespace: plant_anatomy -def: "A shoot node that is part of an inflorescence axis and where a spikelet, flower, floret or inflorescence branch is attached." [GR:Pankaj_Jaiswal] +def: "A shoot axis node (PO:0005004) that is part of an inflorescence axis (PO:0020122)." [GR:Pankaj_Jaiswal, PO:Cooperl] synonym: "nodo de la inflorescencia (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "花序節 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:145 is_a: PO:0005004 ! shoot axis node relationship: part_of PO:0020122 ! inflorescence axis @@ -6105,7 +6173,6 @@ synonym: "hypogynium" EXACT [FNA:b19b39b0-9a57-4ab7-8cb5-3b0af680c9dc] synonym: "花被間柱、子房柄、雌蕊柄 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025029 ! shoot axis is_a: PO:0025395 ! floral organ -relationship: part_of PO:0009046 ! flower [Term] id: PO:0006331 @@ -6171,7 +6238,6 @@ synonym: "hoja embriónica (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gand synonym: "初期の葉、胚葉 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0009025 ! vascular leaf is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0006339 @@ -6425,6 +6491,8 @@ synonym: "gluma de la espiga de la espiguilla (Spanish)" EXACT Spanish [POC:Mari synonym: "雌穂小穂の苞頴 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:382 is_a: PO:0009039 ! glume +intersection_of: PO:0009039 ! glume +intersection_of: part_of PO:0006320 ! ear spikelet relationship: part_of PO:0006320 ! ear spikelet [Term] @@ -6437,6 +6505,8 @@ synonym: "gluma del penacho (borla) de la espiguilla (Spanish)" EXACT Spanish [P synonym: "雄穂小穂の苞頴 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:382 is_a: PO:0009039 ! glume +intersection_of: PO:0009039 ! glume +intersection_of: part_of PO:0006309 ! tassel spikelet relationship: part_of PO:0006309 ! tassel spikelet [Term] @@ -6448,7 +6518,6 @@ synonym: "gluma inferior la espiga de la espiguilla (Spanish)" EXACT Spanish [PO synonym: "雌穂（花）小穂の第一苞頴(first glume) (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006002 ! lower glume is_a: PO:0006367 ! glume of ear spikelet -relationship: part_of PO:0006320 ! ear spikelet [Term] id: PO:0006370 @@ -6460,7 +6529,6 @@ synonym: "gluma superior del penacho (borla) de la espiguilla (Spanish)" EXACT S synonym: "雄穂（花）小穂の第二苞頴(second glume) (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006004 ! upper glume is_a: PO:0006368 ! glume of tassel spikelet -relationship: part_of PO:0006309 ! tassel spikelet [Term] id: PO:0006371 @@ -6471,7 +6539,6 @@ synonym: "gluma superior de la espiga de la espiguilla (Spanish)" EXACT Spanish synonym: "雌穂（花）小穂の第二苞頴(second glume) (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006004 ! upper glume is_a: PO:0006367 ! glume of ear spikelet -relationship: part_of PO:0006320 ! ear spikelet [Term] id: PO:0006372 @@ -6483,7 +6550,6 @@ synonym: "gluma inferior del penacho (borla) de la espiguilla (Spanish)" EXACT S synonym: "雄穂（花）小穂の第一苞頴(first glume) (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006002 ! lower glume is_a: PO:0006368 ! glume of tassel spikelet -relationship: part_of PO:0006309 ! tassel spikelet [Term] id: PO:0006375 @@ -7238,6 +7304,7 @@ def: "A whole plant fruit formation stage (PO:0007042) that spans the interval w comment: This terms is best used for plant with more or less synchronous fruit development and can only be used of the final size of the fruit is known. This stage is to be used for the development stage of a whole plant (PO:0000003). For an individual fruit, use fruit size 30 to 50% stage (PO:0025506). synonym: "7.01-blister stage in maize" RELATED [GRO:0007030] synonym: "7.03 Pod 50% of final length in soybean" RELATED [SOY:0000081] +synonym: "7.2 milk stage/embryo 2" RELATED [MaizeGDB:67373] synonym: "8.01-kernel watery ripe in barley" RELATED [GRO:0007106] synonym: "8.01-kernel watery ripe in oat" RELATED [GRO:0007106] synonym: "8.01-kernel watery ripe in wheat" RELATED [GRO:0007106] @@ -7295,7 +7362,9 @@ name: whole plant fruit formation stage up to 10% namespace: plant_structure_development_stage def: "A whole plant fruit formation stage (PO:0007042) that begins when the first fruit (PO:0009001) on a whole plant (PO:0000003) that has no other fruits as part enters a fruit initiation stage (PO:0025503) and ends when the average size of fruits (PO:0009001) on a whole plant (PO:0000003) has reached 10% of final size." [ISBN:3826331524, MaizeGDB:ms, POC:curators] comment: This terms is best used for plant with more or less synchronous fruit development and can only be used of the final size of the fruit is known. This stage is to be used for the development stage of a whole plant (PO:0000003). For an individual fruit, use fruit size up to 10% stage (PO:0025504). +synonym: "7 linear grain-filling" RELATED [MaizeGDB:64632] synonym: "7.01 Pod 10% of final length in soybean" RELATED [SOY:0000079] +synonym: "7.1 blister stage" RELATED [MaizeGDB:67372] synonym: "E-L 27" RELATED [] synonym: "FF.00 fruit size 10% in Solanaceae" RELATED [SGN:0000041] synonym: "fruit setting" NARROW [] @@ -7382,6 +7451,7 @@ id: PO:0007038 name: whole plant fruit ripening complete stage namespace: plant_structure_development_stage def: "The stage at which fruit ripening is complete." [GR:Anuradha_Pujar, ISBN:3826331524] +synonym: "09-mature grain stage" RELATED [GRO:0007045] synonym: "10-ripening in barley" RELATED [GRO:0007114] synonym: "10-ripening in oat" RELATED [GRO:0007114] synonym: "10-ripening in Triticeae" RELATED [GRO:0007114] @@ -7724,6 +7794,7 @@ namespace: plant_structure_development_stage def: "The stage at which six nodes or six internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.06 6 nodes/internodes visible in soybean" RELATED [SOY:0000055] +synonym: "3.2 late whorl stage" RELATED [MaizeGDB:67357] synonym: "4.07-sixth node detectable in barley" RELATED [GRO:0007087] synonym: "4.07-sixth node detectable in oat" RELATED [GRO:0007087] synonym: "4.07-sixth node detectable in wheat" RELATED [GRO:0007087] @@ -7822,6 +7893,7 @@ namespace: plant_structure_development_stage def: "The stage at which nine nodes or nine internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.09 9 nodes/internodes visible in soybean" RELATED [SOY:0000058] +synonym: "3.3 mid-vegetative" RELATED [MaizeGDB:67359] synonym: "BBCH growth stage 39" RELATED [ISBN:3826331524] is_a: PO:0007089 ! stem elongation stage @@ -7859,6 +7931,7 @@ namespace: plant_structure_development_stage def: "The stage at which eight nodes or eight internodes are visible." [GR:Anuradha_Pujar] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.08 8 nodes/internodes visible in soybean" RELATED [SOY:0000057] +synonym: "3.3 mid-vegetative" RELATED [MaizeGDB:67359] synonym: "BBCH growth stage 38" RELATED [ISBN:3826331524] is_a: PO:0007089 ! stem elongation stage @@ -7926,6 +7999,7 @@ namespace: plant_structure_development_stage def: "The stage at which fifteen nodes or fifteen internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.15 15 nodes/internodes visible in soybean" RELATED [SOY:0000064] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8075,6 +8149,7 @@ namespace: plant_structure_development_stage def: "The stage at which ten nodes or ten internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.10 10 nodes/internodes visible in soybean" RELATED [SOY:0000059] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8102,6 +8177,7 @@ namespace: plant_structure_development_stage def: "The stage at which five nodes or five internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.05 5 nodes/internodes visible in soybean" RELATED [SOY:0000054] +synonym: "3.2 late whorl stage" RELATED [MaizeGDB:67357] synonym: "4.06-fifth node detectable in barley" RELATED [GRO:0007086] synonym: "4.06-fifth node detectable in oat" RELATED [GRO:0007086] synonym: "4.06-fifth node detectable in wheat" RELATED [GRO:0007086] @@ -8179,6 +8255,7 @@ namespace: plant_structure_development_stage def: "The stage at which thirteen nodes or thirteen internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.13 13 nodes/internodes visible in soybean" RELATED [SOY:0000062] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8188,6 +8265,7 @@ namespace: plant_structure_development_stage def: "The stage at which one node or one internode is visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.01 one node visible in soybean" RELATED [SOY:0000050] +synonym: "3.1 ear initiation/mid-whorl stage" RELATED [MaizeGDB:67356] synonym: "4.02-first node detectable in barley" RELATED [GRO:0007082] synonym: "4.02-first node detectable in oat" RELATED [GRO:0007082] synonym: "4.02-first node detectable in wheat" RELATED [GRO:0007082] @@ -8202,6 +8280,7 @@ namespace: plant_structure_development_stage def: "The stage at which four nodes or four internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.04 4 nodes/internodes visible in soybean" RELATED [SOY:0000053] +synonym: "3.2 late whorl stage" RELATED [MaizeGDB:67357] synonym: "4.05-fourth node detectable in barley" RELATED [GRO:0007085] synonym: "4.05-fourth node detectable in oat" RELATED [GRO:0007085] synonym: "4.05-fourth node detectable in wheat" RELATED [GRO:0007085] @@ -8293,6 +8372,7 @@ namespace: plant_structure_development_stage def: "The stage at which three nodes or three internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.03 3 nodes/internodes visible in soybean" RELATED [SOY:0000052] +synonym: "3.1 ear initiation/mid-whorl stage" RELATED [MaizeGDB:67356] synonym: "4.04-third node detectable in barley" RELATED [GRO:0007084] synonym: "4.04-third node detectable in oat" RELATED [GRO:0007084] synonym: "4.04-third node detectable in wheat" RELATED [GRO:0007084] @@ -8307,6 +8387,7 @@ namespace: plant_structure_development_stage def: "The stage at which fourteen nodes or fourteen internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.14 14 nodes/internodes visible in soybean" RELATED [SOY:0000063] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8471,6 +8552,7 @@ namespace: plant_structure_development_stage def: "The stage at which seven nodes or seven internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.07 7 nodes/internodes visible in soybean" RELATED [SOY:0000056] +synonym: "3.3 mid-vegetative" RELATED [MaizeGDB:67359] synonym: "BBCH growth stage 37" RELATED [ISBN:3826331524] is_a: PO:0007089 ! stem elongation stage @@ -8511,6 +8593,7 @@ synonym: "maximum number of tillers detectable in" RELATED [] synonym: "maximum number of tillers visible" RELATED [] synonym: "maximum number of tillers visible in rice" RELATED [] synonym: "nine or more axillary shoots detectable" RELATED [] +synonym: "vegetative lag phase" RELATED [GRO:0007146] synonym: "Zadok scale-29" RELATED [GRO:0007079] is_a: PO:0007073 ! 2 formation of axillary shoot stage @@ -8521,6 +8604,7 @@ namespace: plant_structure_development_stage def: "The stage at which twelve nodes or twelve internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.12 12 nodes/internodes visible in soybean" RELATED [SOY:0000061] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8557,6 +8641,7 @@ namespace: plant_structure_development_stage def: "The stage at which eleven nodes or eleven internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.11 11 nodes/internodes visible in soybean" RELATED [SOY:0000060] +synonym: "3.4 late vegetative" RELATED [MaizeGDB:67360] is_a: PO:0007089 ! stem elongation stage [Term] @@ -8570,6 +8655,7 @@ synonym: "03-four leaf stage in sorghum" RELATED [GRO:0007143] synonym: "1-4 leaf stage in rice" RELATED [GRO:0007142] synonym: "1.03-three to four leaves in maize" RELATED [GRO:0007010] synonym: "1.04 3rd trifoliolate leaf unfolded in soybean" RELATED [SOY:0000018] +synonym: "1.3 3-4 leaves" RELATED [MaizeGDB:25331] synonym: "2 tassel initiation/early whorl stage in maize" RELATED [MaizeGDB:67306] synonym: "2.05-four leaves unfolded in Triticeae" RELATED [GRO:0007063] synonym: "4 leaves unfolded" RELATED [] @@ -8616,6 +8702,7 @@ namespace: plant_structure_development_stage def: "The stage at which two nodes or two internodes are visible." [GR:Pankaj_Jaiswal] comment: A measure of vegetative growth, but leaf production is to be preferred. synonym: "3.02 2 nodes/internode visible in soybean" RELATED [SOY:0000051] +synonym: "3.1 ear initiation/mid-whorl stage" RELATED [MaizeGDB:67356] synonym: "4.03-second node detectable in barley" RELATED [GRO:0007083] synonym: "4.03-second node detectable in oat" RELATED [GRO:0007083] synonym: "4.03-second node detectable in wheat" RELATED [GRO:0007083] @@ -8824,6 +8911,7 @@ name: leaf production stage namespace: plant_structure_development_stage def: "The stage at which the leaves produced by SAM are visible above the ground in a seedling or mature plant." [Poc:curators] comment: This stage is recommended over rosette growth or stem elongation as it is most easily observed and least ambiguous. +synonym: "1 seedling" RELATED [MaizeGDB:1863] synonym: "leaf production in Solanaceae" RELATED [SGN:0000012] is_a: PO:0007112 ! 1 main shoot growth stage @@ -9184,6 +9272,7 @@ id: PO:0007605 name: androecium development stage namespace: plant_structure_development_stage def: "A collective phyllome structure development stage (PO:0025578) that has as a primary participant an androecium (PO:0009061)." [POC:curators, POC:Laura_Moore] +synonym: "stamen development" RELATED [GRO:0007159] xref: PO_GIT:547 is_a: PO:0025578 ! collective phyllome structure development stage relationship: part_of PO:0007600 ! floral organ differentiation stage @@ -9193,6 +9282,7 @@ id: PO:0007606 name: gynoecium development stage namespace: plant_structure_development_stage def: "A collective phyllome structure development stage (PO:0025578) that has a primary participant a gynoecium (PO:0009062)." [POC:curators, POC:Laura_Moore] +synonym: "ovule development" RELATED [GRO:0007160] xref: PO_GIT:547 is_a: PO:0025578 ! collective phyllome structure development stage relationship: part_of PO:0007600 ! floral organ differentiation stage @@ -9250,6 +9340,7 @@ name: stamen primordium visible stage namespace: plant_structure_development_stage def: "Stage of androecium development that begins when the stamens or petal-stamen primordia arise." [POC:curators] synonym: "stage 7 flower in Arabidopsis" RELATED [] +synonym: "stamen stage ST0" RELATED [GRO:0007209] is_a: PO:0007605 ! androecium development stage [Term] @@ -9296,6 +9387,7 @@ id: PO:0007618 name: carpel primordium visible stage namespace: plant_structure_development_stage def: "Stage of gynoecium development that begins when the carpel primordia arise." [POC:curators] +synonym: "ovule stage OV0" RELATED [GRO:0007178] is_a: PO:0007606 ! gynoecium development stage [Term] @@ -9312,6 +9404,7 @@ name: ovule primordium visible stage namespace: plant_structure_development_stage def: "Stage of ovule development that begins when the ovule primordia arise." [POC:curators] synonym: "ovule stage 1-I in Arabidopsis" RELATED [] +synonym: "ovule stage OV1" RELATED [GRO:0007181] is_a: PO:0007619 ! ovule development stage [Term] @@ -9331,6 +9424,7 @@ namespace: plant_structure_development_stage def: "Stage of ovule development that begins when the integument primordia are visible." [POC:curators] synonym: "ovule stage 2-II in Arabidopsis" RELATED [] synonym: "ovule stage 2-III in Arabidopsis" RELATED [] +synonym: "ovule stage OV2" RELATED [GRO:0007180] is_a: PO:0004504 ! ovule differentiation and expansion stage [Term] @@ -9339,6 +9433,7 @@ name: A megaspore mother cell enlarges stage namespace: plant_structure_development_stage def: "The stage of megagametophyte development when the megaspore mother cell enlarges." [POC:curators] synonym: "ovule stage 2-I in Arabidopsis" RELATED [] +synonym: "ovule stage OV2" RELATED [GRO:0007180] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9347,6 +9442,7 @@ name: B meiosis of megaspore mother cell stage namespace: plant_structure_development_stage def: "The stage of megagametophyte development when the megaspore mother cell undergoes meiosis." [POC:curators] synonym: "ovule stage 2-IV in Arabidopsis" RELATED [] +synonym: "ovule stage OV4" RELATED [GRO:0007179] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9355,6 +9451,7 @@ name: C tetrad of megaspores stage namespace: plant_structure_development_stage def: "The product of meiosis of the megaspore mother cell." [POC:curators] synonym: "ovule stage 2-V in Arabidopsis" RELATED [] +synonym: "ovule stage OV4" RELATED [GRO:0007179] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9364,6 +9461,7 @@ namespace: plant_structure_development_stage def: "The stage of megagametophyte development when non-functional megaspores degenerate." [POC:curators] comment: In some plants more than one megaspore contributes to the megametophyte. synonym: "ovule stage 3-I in Arabidopsis" RELATED [] +synonym: "ovule stage OV6" RELATED [GRO:0007184] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9372,6 +9470,7 @@ name: E two nucleate megagametophyte stage namespace: plant_structure_development_stage def: "The stage of megagametophyte development when there are two nuclei." [POC:curators] synonym: "ovule stage 3-II in Arabidopsis" RELATED [] +synonym: "ovule stage OV7" RELATED [GRO:0007185] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9380,6 +9479,7 @@ name: F four nucleate megagametophyte stage namespace: plant_structure_development_stage def: "The stage of megagametophyte development when there are four nuclei." [POC:curators] synonym: "ovule stage 3-IV in Arabidopsis" RELATED [] +synonym: "ovule stage OV8" RELATED [GRO:0007188] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9389,6 +9489,7 @@ namespace: plant_structure_development_stage def: "The stage of megagametophyte development when there are eight nuclei." [POC:curators] comment: Some plants do not form an eight nucleate megametophyte. synonym: "ovule stage 3-V in Arabidopsis" RELATED [] +synonym: "ovule stage OV9" RELATED [GRO:0007187] is_a: PO:0007621 ! megagametophyte development stage [Term] @@ -9413,6 +9514,7 @@ id: PO:0007632 name: seed maturation stage namespace: plant_structure_development_stage def: "Stage during which the seed storage products (storage proteins, lipids and starch) are being accumulated, either in the cotyledons or in the endosperm. Also, LEA proteins are accumulated and subsequently, a desiccation tolerant state is reached at the end of this stage." [TAIR:Katica_Ilic] +synonym: "embryo stage EM10" RELATED [GRO:0007177] synonym: "seed maturation in Arabidopsis" RELATED [] xref: PO_GIT:568 is_a: PO:0001170 ! seed development stage @@ -9482,6 +9584,8 @@ synonym: "果実珠心 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:448 xref: PO_GIT:49 is_a: PO:0020020 ! nucellus +intersection_of: PO:0020020 ! nucellus +intersection_of: part_of PO:0009001 ! fruit relationship: part_of PO:0009001 ! fruit [Term] @@ -9555,7 +9659,6 @@ synonym: "sistema vascular del embrión (Spanish)" EXACT Spanish [POC:Maria_A synonym: "胚維管系 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000034 ! vascular system is_a: PO:0025233 ! portion of embryo plant tissue -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0008012 @@ -9894,10 +9997,11 @@ is_a: PO:0025477 ! floral organ primordium id: PO:0008041 name: stem internode elongation zone namespace: plant_anatomy -def: "A shoot internode elongation zone that is part of a stem internode." [POC:curators] +def: "A shoot axis internode elongation zone (PO:0025100) that is part of a stem internode (PO:0009047)." [POC:cooperl, POC:curators] synonym: "zona de elongación del internodo del tallo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "茎節間伸長帯（層） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] -is_a: PO:0025100 ! shoot internode elongation zone +xref: PO_GIT:197 +is_a: PO:0025100 ! shoot axis internode elongation zone relationship: part_of PO:0020142 ! stem internode [Term] @@ -10597,7 +10701,6 @@ synonym: "花苞（葉） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:84 is_a: PO:0009055 ! bract is_a: PO:0025395 ! floral organ -relationship: part_of PO:0009046 ! flower [Term] id: PO:0009035 @@ -10647,7 +10750,7 @@ alt_id: PO:0006431 alt_id: PO:0006432 alt_id: PO:0006433 alt_id: PO:0006434 -def: "A flower bract (PO:0009034) that is the lower of the two bracts (PO:0009055) enclosing a (PO:0009082) spikelet floret." [APweb:Glossary, POC:curators, POC:Laurel_Cooper] +def: "The lower, usually larger, of the pair of flower bracts (PO:0009034) enclosing a (PO:0009082) spikelet floret." [APweb:Glossary, POC:curators, POC:Laurel_Cooper] comment: A lemma (PO:0009037) and palea (PO:0009038) enclose an individual spikelet floret (PO:0009082). The lemma is usually the larger of the two. Since it is not clear what the lemma and palea correspond to in conventional flowers, no assumptions of homology are made. If you are annotating to this structure for Zea species an annotation can also be made to the more specific floret type, if known. Choose the most specific term possible from: ear floret (PO:0006354), lower floret of pedicellate spikelet of ear (PO:0006353), lower floret of sessile spikelet of ear (PO:0006351), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352), tassel floret (PO:0006310), lower floret of pedicellate spikelet of tassel (PO:0006313), lower floret of sessile spikelet of tassel (PO:0006315), upper floret of pedicellate spikelet of tassel (PO:0006314), upper floret of sessile spikelet of tassel (PO:0006316). Found in Found in Poaceae, Cyperaceae and other Poales. subset: Maize subset: Poaceae @@ -10685,7 +10788,7 @@ alt_id: PO:0006427 alt_id: PO:0006428 alt_id: PO:0006429 alt_id: PO:0006430 -def: "A flower bract (PO:0009034) that is the upper/distal of the two bracts (PO:0009055) enclosing a (PO:0009082) spikelet floret." [APweb:Glossary, POC:curators, POC:Laurel_Cooper] +def: "The upper (distal), usually smaller, of the pair of flower bracts (PO:0009034) enclosing a (PO:0009082) spikelet floret." [APweb:Glossary, POC:curators, POC:Laurel_Cooper] comment: A lemma (PO:0009037) and palea (PO:0009038) enclose an individual spikelet floret (PO:0009082). The palea is usually the smaller of the two. Since it is not clear what the lemma and palea correspond to in conventional flowers, no assumptions of homology are made. If you are annotating to this structure for Zea species an annotation can also be made to the more specific floret type, if known. Choose the most specific term possible from: ear floret (PO:0006354), lower floret of pedicellate spikelet of ear (PO:0006353), lower floret of sessile spikelet of ear (PO:0006351), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352), tassel floret (PO:0006310), lower floret of pedicellate spikelet of tassel (PO:0006313), lower floret of sessile spikelet of tassel (PO:0006315), upper floret of pedicellate spikelet of tassel (PO:0006314), upper floret of sessile spikelet of tassel (PO:0006316). Found in Found in Poaceae, Cyperaceae and other Poales. subset: reference synonym: "pale" BROAD [FNA:3d284a17-79c6-40b0-84c5-1cd337f43e55] @@ -10824,7 +10927,7 @@ id: PO:0009047 name: stem namespace: plant_anatomy def: "A shoot axis (PO:0025029) that is the primary axis of a plant." [POC:curators] -comment: Often bears leaves and buds. It is usually above ground, more or less negatively geotropic, and exogenous in origin. +comment: A stem often bears leaves and buds. It is usually above ground, and is more or less negatively geotropic. subset: reference subset: TraitNet synonym: "bole" NARROW [FNA:a5ba9e16-e0af-4430-a3a0-7aeb052fbffd] @@ -10832,6 +10935,7 @@ synonym: "caña (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "cane" NARROW [] synonym: "caudex" NARROW [FNA:cea24c10-d5ff-435f-aa40-db77dcbd27f0] synonym: "caudices" NARROW Plural [FNA:3c0e37e8-e363-4962-847e-5f9f2906d0f8] +synonym: "core" NARROW [] synonym: "culm" EXACT [] synonym: "eje primario (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "primary axis" EXACT [] @@ -11682,6 +11786,8 @@ subset: Maize synonym: "meristema del penacho (borla) (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "雄穂分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000230 ! inflorescence meristem +intersection_of: PO:0000230 ! inflorescence meristem +intersection_of: part_of PO:0020126 ! tassel inflorescence relationship: part_of PO:0020126 ! tassel inflorescence [Term] @@ -11695,7 +11801,6 @@ synonym: "雄穂側分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:437 is_a: PO:0009105 ! inflorescence branch meristem is_a: PO:0009106 ! tassel meristem -relationship: part_of PO:0020126 ! tassel inflorescence [Term] id: PO:0009108 @@ -11716,6 +11821,8 @@ subset: Maize synonym: "meristema de la espiga (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "雌穂分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000230 ! inflorescence meristem +intersection_of: PO:0000230 ! inflorescence meristem +intersection_of: part_of PO:0020136 ! ear inflorescence relationship: part_of PO:0020136 ! ear inflorescence [Term] @@ -11729,7 +11836,6 @@ synonym: "雌穂側分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: OBOS_SF_PO:3481640 is_a: PO:0009105 ! inflorescence branch meristem is_a: PO:0009109 ! ear meristem -relationship: part_of PO:0020136 ! ear inflorescence [Term] id: PO:0009111 @@ -11755,7 +11861,6 @@ synonym: "植物胚軸 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:339 is_a: PO:0025004 ! plant axis is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0019022 @@ -12253,7 +12358,6 @@ synonym: "幼芽 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:339 is_a: PO:0000037 ! shoot apex is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0020033 @@ -12705,7 +12809,6 @@ synonym: "célula central (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gando synonym: "中央細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:182 is_a: PO:0025026 ! embryo sac cell -relationship: part_of PO:0025074 ! embryo sac [Term] id: PO:0020091 @@ -12754,7 +12857,6 @@ subset: reference synonym: "célula antipodal (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "反足細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025026 ! embryo sac cell -relationship: part_of PO:0025074 ! embryo sac [Term] id: PO:0020094 @@ -12925,7 +13027,6 @@ synonym: "suspensor (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "胚柄 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:248 is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0020109 @@ -12952,7 +13053,6 @@ synonym: "haustorial cotyledon" RELATED [] synonym: "胚盤 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:249 is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo [Term] id: PO:0020121 @@ -13049,7 +13149,7 @@ id: PO:0020127 name: primary root namespace: plant_anatomy alt_id: PO:0020089 -def: "A root (PO:0009005) that develops directly from an seedling radicle (PO:0020127)." [ISBN:0122151704, POC:curators] +def: "A root (PO:0009005) that develops directly from a seedling radicle (PO:0020127)." [ISBN:0122151704, POC:curators] comment: The first root of a plant. In dicots and gymnosperms it becomes the tap root, the central axis of a root system (PO:0025025). subset: TraitNet synonym: "raíz primaria (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] @@ -13069,6 +13169,8 @@ synonym: "margen de la hoja (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandol synonym: "葉縁 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:85 is_a: PO:0025018 ! phyllome margin +intersection_of: PO:0025005 ! organ margin +intersection_of: part_of PO:0025034 ! leaf relationship: part_of PO:0025034 ! leaf [Term] @@ -13223,9 +13325,10 @@ is_a: PO:0020138 ! leaf lamina vein id: PO:0020141 name: stem node namespace: plant_anatomy -def: "A shoot node that is part of a stem." [APweb:Glossary] +def: "A shoot axis node (PO:0005004) that is part of a stem (PO:0009047)." [APweb:Glossary, PO:cooperl] synonym: "nodo del tallo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "茎節 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:145 is_a: PO:0005004 ! shoot axis node relationship: part_of PO:0009047 ! stem @@ -13284,6 +13387,7 @@ synonym: "根端分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:577 is_a: PO:0006085 ! root meristem is_a: PO:0020144 ! apical meristem +relationship: part_of PO:0009005 ! root [Term] id: PO:0020148 @@ -13336,6 +13440,7 @@ id: PO:0021004 name: inflorescence initiation stage namespace: plant_structure_development_stage def: "Stage of inflorescence development marked by the formation of the inflorescence meristem on a vegetative branch." [POC:Felipe_Zapata] +synonym: "panicle stage PA1" RELATED [GRO:0007189] synonym: "花序の開始期 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0001083 ! inflorescence development stage @@ -13353,6 +13458,8 @@ synonym: "基本的な（主要な）器官部 (Japanese)" EXACT Japanese [NIG:Y xref: PO_GIT:52 xref: PO_GIT:60 is_a: PO:0025498 ! cardinal part of multi-tissue plant structure +intersection_of: PO:0025498 ! cardinal part of multi-tissue plant structure +intersection_of: part_of PO:0009008 ! plant organ relationship: part_of PO:0009008 ! plant organ created_by: rwalls creation_date: 2010-02-11T01:18:24Z @@ -13580,7 +13687,8 @@ synonym: "margen del filoma (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandol synonym: "フィロム縁 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:70 is_a: PO:0025005 ! organ margin -relationship: part_of PO:0006001 ! phyllome +intersection_of: PO:0025005 ! organ margin +intersection_of: part_of PO:0006001 ! phyllome relationship: part_of PO:0025396 ! phyllome lamina created_by: rwalls creation_date: 2010-04-02T10:51:16Z @@ -13667,7 +13775,7 @@ creation_date: 2010-04-28T11:04:34Z id: PO:0025024 name: branch node namespace: plant_anatomy -def: "A shoot node (PO:0005004) that is part of a branch (PO:0025073)." [POC:curators] +def: "A shoot axis node (PO:0005004) that is part of a branch (PO:0025073)." [POC:curators] synonym: "nodo ramificado (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "枝節 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:145 @@ -13703,6 +13811,8 @@ synonym: "embryo sac cell" RELATED [] synonym: "megagametophytic cell" EXACT [] xref: PO_GIT:508 is_a: PO:0025606 ! native plant cell +intersection_of: PO:0025606 ! native plant cell +intersection_of: part_of PO:0025074 ! embryo sac relationship: part_of PO:0025074 ! embryo sac created_by: rwalls creation_date: 2010-05-07T02:36:24Z @@ -13732,7 +13842,8 @@ synonym: "胚性植物細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:281 is_a: PO:0025099 ! embryo plant structure is_a: PO:0025606 ! native plant cell -relationship: part_of PO:0009009 ! plant embryo +intersection_of: PO:0025606 ! native plant cell +intersection_of: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2010-05-07T02:41:17Z @@ -13893,7 +14004,7 @@ synonym: "potato tuber flesh" NARROW [] synonym: "地下塊茎 貯蔵柔組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:103 is_a: PO:0025036 ! tuber storage parenchyma -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-05-25T04:38:30Z @@ -13954,7 +14065,7 @@ synonym: "yema vegetativa axilar de tubérculo subterráneo (Spanish)" EXA synonym: "地下塊茎腋栄養芽 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:102 is_a: PO:0025040 ! shoot axis tuber axillary vegetative bud -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-05-26T08:18:09Z @@ -13993,7 +14104,7 @@ synonym: "mature potato tuber skin" NARROW [] synonym: "peridermis de tubérculo subterráneo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "地下塊茎 周皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025043 ! shoot axis tuber periderm -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-05-27T09:31:12Z @@ -14032,7 +14143,7 @@ synonym: "epidermis de tubérculo subterráneo (Spanish)" EXACT Spanish [P synonym: "young potato tuber skin" NARROW [] synonym: "地下塊茎 表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025046 ! shoot axis tuber epidermis -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-05-27T09:55:39Z @@ -14140,6 +14251,8 @@ def: "A portion of tuber cortex that is part of an aerial tuber storage parenchy synonym: "corteza del tubérculo aéreo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "むかご（珠芽）皮層 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025055 ! tuber cortex +intersection_of: PO:0025055 ! tuber cortex +intersection_of: part_of PO:0025039 ! aerial tuber storage parenchyma relationship: part_of PO:0025039 ! aerial tuber storage parenchyma created_by: rwalls creation_date: 2010-06-03T08:05:23Z @@ -14154,6 +14267,8 @@ synonym: "corteza del tubérculo subterráneo (Spanish)" EXACT Spanish [PO synonym: "Outer storage tissue" EXACT [PO_REF:00004] synonym: "地下塊茎 皮層 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025055 ! tuber cortex +intersection_of: PO:0025055 ! tuber cortex +intersection_of: part_of PO:0025038 ! subterranean tuber storage parenchyma relationship: part_of PO:0025038 ! subterranean tuber storage parenchyma created_by: rwalls creation_date: 2010-06-03T08:05:23Z @@ -14334,7 +14449,7 @@ def: "A tuber axillary bud meristem that is part of a subterranean tuber." [POC: synonym: "meristema axilar de yema de tubérculo subterráneo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "地下塊茎腋芽 分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025068 ! shoot axis tuber axillary bud meristem -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-06-15T01:03:59Z @@ -14479,7 +14594,7 @@ namespace: plant_anatomy def: "A shoot axis internode (PO:0005005) that is part of a branch (PO:0025073)." [POC:curators, POC:Laurel_Cooper] synonym: "internodo de una ramificación (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "枝節間 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] -xref: OBO-SF2_PO:146 +xref: PO_GIT:146 is_a: PO:0005005 ! shoot axis internode relationship: part_of PO:0025073 ! branch created_by: rwalls @@ -14496,7 +14611,7 @@ synonym: "epiblasto (epiblastema) axilar de tubérculo subterráneo (Spani synonym: "tuber sprout" EXACT [] synonym: "地下塊茎腋 分げつ (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025003 ! tuber axillary shoot -relationship: part_of PO:0004547 ! subterranean tuber +relationship: part_of PO:0004547 ! subterranean shoot axis tuber created_by: rwalls creation_date: 2010-09-16T03:18:48Z @@ -14653,6 +14768,8 @@ def: "A portion of phyllome epidermis that is part of a carpel." [POC:Ramona_Wal synonym: "epidermis del carpelo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "心皮 表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009030 ! carpel relationship: part_of PO:0009030 ! carpel created_by: rwalls creation_date: 2010-12-17T12:36:46Z @@ -14665,6 +14782,8 @@ def: "A portion of phyllome epidermis that is part of a stamen." [POC:Ramona_Wal synonym: "epidermis del estambre (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "雄蕊表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009029 ! stamen relationship: part_of PO:0009029 ! stamen created_by: rwalls creation_date: 2010-12-17T12:36:46Z @@ -14693,17 +14812,20 @@ synonym: "胚性植物構造 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:245 xref: PO_GIT:339 is_a: PO:0009011 ! plant structure +intersection_of: PO:0009011 ! plant structure +intersection_of: part_of PO:0009009 ! plant embryo relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2010-11-05T01:36:24Z [Term] id: PO:0025100 -name: shoot internode elongation zone +name: shoot axis internode elongation zone namespace: plant_anatomy -def: "A plant axis elongation zone that is part of a shoot axis internode." [POC:Ramona_Walls] +def: "A plant axis elongation zone (PO:0025180) that is part of a shoot axis internode (PO:0005005)." [POC:cooperl, POC:Ramona_Walls] synonym: "zona de elongación del internodo de epiblasto (epiblastema) (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "シュート節間伸長帯（層） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:197 is_a: PO:0025180 ! plant axis elongation zone relationship: part_of PO:0005005 ! shoot axis internode created_by: rwalls @@ -14713,10 +14835,11 @@ creation_date: 2011-01-03T11:39:43Z id: PO:0025101 name: branch internode elongation zone namespace: plant_anatomy -def: "A shoot axis internode elongation zone that is part of a branch internode." [POC:Ramona_Walls] +def: "A shoot axis internode elongation zone (PO:0025100) that is part of a branch internode (PO:0025080)." [POC:cooperl, POC:Ramona_Walls] synonym: "zona de elongación de la ramificación del internodo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "枝節間伸長帯（層） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] -is_a: PO:0025100 ! shoot internode elongation zone +xref: PO_GIT:197 +is_a: PO:0025100 ! shoot axis internode elongation zone relationship: part_of PO:0025080 ! branch internode created_by: rwalls creation_date: 2011-01-03T11:43:48Z @@ -15123,6 +15246,8 @@ synonym: "petiole wing" NARROW [CO_125:0000005] synonym: "葉柄葉身、葉片 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:428 is_a: PO:0025396 ! phyllome lamina +intersection_of: PO:0025060 ! lamina +intersection_of: part_of PO:0020038 ! petiole relationship: part_of PO:0020038 ! petiole created_by: rwalls creation_date: 2010-11-15T10:28:38Z @@ -15522,6 +15647,8 @@ def: "A portion of phyllome epidermis (PO:0025157) that is part of a bract (PO:0 synonym: "epidermis de la bráctea (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "苞表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009055 ! bract relationship: part_of PO:0009055 ! bract created_by: rwalls creation_date: 2010-11-15T02:34:14Z @@ -15591,7 +15718,6 @@ subset: CL synonym: "célula ramificada de tricoma multicelular (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "多細胞毛（毛茸、糸状体）分枝細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0008030 ! trichome cell -relationship: part_of PO:0025162 ! multicellular trichome created_by: rwalls creation_date: 2010-11-18T08:01:29Z @@ -15784,7 +15910,6 @@ synonym: "葉刺状突起 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:220 is_a: PO:0006016 ! leaf epidermis is_a: PO:0025169 ! prickle -relationship: part_of PO:0025034 ! leaf created_by: rwalls creation_date: 2010-11-22T09:35:01Z @@ -15844,9 +15969,10 @@ creation_date: 2010-11-22T09:58:06Z id: PO:0025180 name: plant axis elongation zone namespace: plant_anatomy -def: "A cardinal organ part that is part of a plant axis that is located directly behind an apical meristem, in which the cells are undergoing longitudinal expansion." [POC:curators] +def: "A cardinal organ part (PO:0025001) which is part of a plant axis (PO:0025004), is located proximal to an apical meristem (PO:0020144), and in which plant cells (PO:0009002) are undergoing longitudinal expansion." [POC:cooperl, POC:curators] synonym: "zona de elongación del eje de la planta (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "植物軸伸長帯 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:197 is_a: PO:0025001 ! cardinal organ part relationship: part_of PO:0025004 ! plant axis created_by: rwalls @@ -15856,10 +15982,11 @@ creation_date: 2010-12-03T08:50:10Z id: PO:0025181 name: root elongation zone namespace: plant_anatomy -def: "A plant axis elongation zone that is part of a root tip and located directly behind the root apical meristem." [POC:curators] +def: "A plant axis elongation zone (PO:0025180) that is part of a root tip (PO:0000025) and located proximal to a root apical meristem (PO:0020147)." [POC:cooperl, POC:curators] comment: The root elongation zone is only a few millimeters in length and is the only portion of the root in which cell elongation generally occurs. Root hairs are not yet produced in this region. Primary root tissues begin to differentiate in the root elongation zone. This term replaces elongation zone (PO:0020125). synonym: "zona de elongación de la raíz (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "根伸長帯（層） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:197 is_a: PO:0025180 ! plant axis elongation zone relationship: part_of PO:0000025 ! root tip created_by: rwalls @@ -15890,7 +16017,6 @@ synonym: "leaf epidermis stomatal complex" EXACT [] synonym: "葉気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006016 ! leaf epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0025034 ! leaf created_by: rwalls creation_date: 2010-12-09T11:47:55Z @@ -15902,6 +16028,8 @@ def: "A portion of phyllome epidermis that is part of a tepal (PO:0009033)." [PO synonym: "epidermis del tépalo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "花被片表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0009033 ! tepal relationship: part_of PO:0009033 ! tepal created_by: rwalls creation_date: 2010-12-06T01:15:36Z @@ -15918,7 +16046,6 @@ synonym: "leaf lamina epidermis stomatal complex" EXACT [] synonym: "葉身気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000047 ! leaf lamina epidermis is_a: PO:0025183 ! leaf stomatal complex -relationship: part_of PO:0020039 ! leaf lamina created_by: rwalls creation_date: 2010-12-09T11:49:35Z @@ -15968,7 +16095,6 @@ synonym: "petiole epidermis stomatal complex" EXACT [] synonym: "葉柄 気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000051 ! petiole epidermis is_a: PO:0025183 ! leaf stomatal complex -relationship: part_of PO:0020038 ! petiole created_by: rwalls creation_date: 2010-12-09T11:49:35Z @@ -16163,6 +16289,7 @@ synonym: "internodo del rizoma (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gan synonym: "根茎節間 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: OBO-SF2_PO:146 xref: PO_GIT:146 +xref: PO_GIT:28 is_a: PO:0005005 ! shoot axis internode relationship: part_of PO:0004542 ! rhizome created_by: rwalls @@ -16325,7 +16452,6 @@ synonym: "complejo estomático de la bráctea (Spanish)" EXACT Spanish [PO synonym: "苞気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025158 ! bract epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009055 ! bract created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16340,7 +16466,6 @@ synonym: "complejo estomático del carpelo (Spanish)" EXACT Spanish [POC:Mari synonym: "心皮気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025096 ! carpel epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009030 ! carpel created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16355,7 +16480,6 @@ synonym: "petal epidermis stomatal complex" EXACT [] synonym: "花弁気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006041 ! petal epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009032 ! petal created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16370,7 +16494,6 @@ synonym: "sepal epidermis stomatal complex" EXACT [] synonym: "がく片気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006040 ! sepal epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009031 ! sepal created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16385,7 +16508,6 @@ synonym: "stamen epidermis stomatal complex" EXACT [] synonym: "雄蕊気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025097 ! stamen epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009029 ! stamen created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16400,7 +16522,6 @@ synonym: "tepal epidermis stomatal complex" EXACT [] synonym: "花被片気孔装置 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025184 ! tepal epidermis is_a: PO:0025215 ! phyllome stomatal complex -relationship: part_of PO:0009033 ! tepal created_by: rwalls creation_date: 2010-12-20T08:27:52Z @@ -16538,7 +16659,8 @@ synonym: "植物胚性組織 の一部 (Japanese)" EXACT Japanese [NIG:Yukiko_ xref: PO_GIT:338 is_a: PO:0009007 ! portion of plant tissue is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo +intersection_of: PO:0009007 ! portion of plant tissue +intersection_of: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2010-12-20T12:27:10Z @@ -16757,6 +16879,8 @@ comment: If you are annotating to this term, please add an additional annotation synonym: "epidermis de la vaina de la hoja (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "葉鞘表皮 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0006016 ! leaf epidermis +intersection_of: PO:0005679 ! epidermis +intersection_of: part_of PO:0020104 ! leaf sheath relationship: part_of PO:0020104 ! leaf sheath created_by: rwalls creation_date: 2010-12-30T03:58:22Z @@ -16848,9 +16972,10 @@ creation_date: 2011-01-05T12:05:43Z id: PO:0025257 name: primary root elongation zone namespace: plant_anatomy -def: "A root elongation zone that is part of a primary root tip." [POC:Ramona_Walls] +def: "A root elongation zone (PO:0025181) that is part of a primary root tip (PO:0000026)." [POC:cooperl, POC:Ramona_Walls] synonym: "zona de elongación de la raíz primaria (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次根伸長帯（層） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:197 is_a: PO:0025181 ! root elongation zone relationship: part_of PO:0000026 ! primary root tip created_by: rwalls @@ -17227,7 +17352,6 @@ synonym: "胚頂端細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:281 is_a: PO:0025028 ! embryo plant cell is_a: PO:0030015 ! sporophyte meristematic apical cell -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-12T09:05:04Z @@ -17255,7 +17379,6 @@ synonym: "胚子葉鞘、胚鞘葉 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamaza xref: PO_GIT:294 is_a: PO:0020033 ! coleoptile is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-20T02:20:11Z @@ -17283,7 +17406,6 @@ synonym: "胚根鞘 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:340 is_a: PO:0020034 ! coleorhiza is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-20T02:34:16Z @@ -17339,7 +17461,6 @@ synonym: "胚上胚軸 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:342 is_a: PO:0020035 ! epicotyl is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-25T10:13:08Z @@ -17367,7 +17488,6 @@ synonym: "胚中茎、胚中胚軸 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamaza xref: PO_GIT:343 is_a: PO:0020037 ! mesocotyl is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-25T10:21:58Z @@ -17397,7 +17517,6 @@ synonym: "胚幼根 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:344 is_a: PO:0020031 ! radicle is_a: PO:0025099 ! embryo plant structure -relationship: part_of PO:0009009 ! plant embryo created_by: rwalls creation_date: 2011-04-25T10:41:14Z @@ -17742,9 +17861,10 @@ creation_date: 2011-05-09T01:26:21Z id: PO:0025321 name: cotyledonary node namespace: plant_anatomy -def: "A stem node from which one or more cotyledons grow." [POC:Ramona_Walls] +def: "A stem node (PO:0020141) from which cotyledons (PO:0020030) may develop." [PO:cooperl, POC:Ramona_Walls] synonym: "nodo del cotiledón (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "子葉節 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] +xref: PO_GIT:145 is_a: PO:0020141 ! stem node created_by: rwalls creation_date: 2011-05-09T01:27:53Z @@ -18127,6 +18247,8 @@ synonym: "vena del filoma laminar (Spanish)" EXACT Spanish [POC:Maria_Alejandra_ synonym: "フィロム葉身脈 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:462 is_a: PO:0005020 ! vascular bundle +intersection_of: PO:0005020 ! vascular bundle +intersection_of: part_of PO:0025396 ! phyllome lamina relationship: part_of PO:0025396 ! phyllome lamina created_by: rwalls creation_date: 2012-04-18T01:41:29Z @@ -18137,8 +18259,8 @@ name: awn namespace: plant_anatomy def: "A cardinal organ part that is a slender, more or less straight and stiff, fine-pointed, terminal or subterminal appendage of a glume, lemma, or palea." [FNA:glossary] comment: Found in a spikelet of Poaceae. Sometimes the awn is a continuation of the bearing structure's central primary vein. -synonym: "arista" EXACT [FNA:5e6f29b2-6a37-4663-888b-7cb315ef277e] synonym: "arista" EXACT [FNA:399ba59a-deb1-4bc9-b7e5-ed2b89700d5c] +synonym: "arista" EXACT [FNA:5e6f29b2-6a37-4663-888b-7cb315ef277e] synonym: "arista (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "bristle" BROAD [FNA:78121d02-e7db-45eb-b1b7-011d5026beae] synonym: "seta" RELATED [FNA:c751440c-a7b3-4997-aed8-47f8254fd05f] @@ -18573,6 +18695,8 @@ synonym: "espacio intercelular en el mesófilo de la hoja (Spanish)" EXACT Sp synonym: "葉肉細胞内空間（間隙） (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:411 is_a: PO:0025379 ! intercellular space +intersection_of: PO:0025379 ! intercellular space +intersection_of: part_of PO:0005645 ! leaf mesophyll relationship: part_of PO:0005645 ! leaf mesophyll created_by: Laurel_Cooper creation_date: 2012-01-06T01:46:55Z @@ -18738,6 +18862,8 @@ synonym: "葉身網目隙 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: OBO-SF_PO:3438986 xref: PO_GIT:397 is_a: PO:0025391 ! phyllome lamina areole +intersection_of: PO:0025391 ! phyllome lamina areole +intersection_of: part_of PO:0020039 ! leaf lamina relationship: part_of PO:0020039 ! leaf lamina created_by: rwalls creation_date: 2012-01-19T10:45:01Z @@ -18787,6 +18913,8 @@ synonym: "flower organ" EXACT [] synonym: "花器官 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:423 is_a: PO:0009008 ! plant organ +intersection_of: PO:0009008 ! plant organ +intersection_of: part_of PO:0009046 ! flower relationship: part_of PO:0009046 ! flower created_by: rwalls creation_date: 2012-01-19T11:44:36Z @@ -18800,6 +18928,8 @@ synonym: "filoma laminar (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "フィロム葉身 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:428 is_a: PO:0025513 ! organ lamina +intersection_of: PO:0025060 ! lamina +intersection_of: part_of PO:0006001 ! phyllome relationship: part_of PO:0006001 ! phyllome created_by: rwalls creation_date: 2012-01-19T12:56:11Z @@ -18840,7 +18970,6 @@ synonym: "葉気孔下腔, 呼吸腔 (Japanese)" EXACT Japanese [NIG:Yukiko_Yama xref: PO_GIT:415 is_a: PO:0025380 ! leaf mesophyll intercellular space is_a: PO:0025398 ! phyllome substomatal cavity -relationship: part_of PO:0005645 ! leaf mesophyll created_by: Laurel_Cooper creation_date: 2012-01-23T03:00:45Z @@ -19303,7 +19432,6 @@ synonym: "子葉原基 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:407 is_a: PO:0025233 ! portion of embryo plant tissue is_a: PO:0025430 ! phyllome anlagen -relationship: part_of PO:0009009 ! plant embryo created_by: Laurel_Cooper creation_date: 2012-02-07T09:07:56Z @@ -19404,6 +19532,8 @@ synonym: "zona cambial del eje del epiblasto (Spanish)" EXACT Spanish [POC:Maria synonym: "シュート軸形成層 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:446 is_a: PO:0025439 ! cambial zone +intersection_of: PO:0025439 ! cambial zone +intersection_of: part_of PO:0025029 ! shoot axis relationship: part_of PO:0025029 ! shoot axis created_by: rwalls creation_date: 2012-03-01T10:38:26Z @@ -19418,6 +19548,8 @@ synonym: "zona cambial de la raíz (Spanish)" EXACT Spanish [POC:Maria_Alejan synonym: "根形成層 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:446 is_a: PO:0025439 ! cambial zone +intersection_of: PO:0025439 ! cambial zone +intersection_of: part_of PO:0009005 ! root relationship: part_of PO:0009005 ! root created_by: rwalls creation_date: 2012-03-01T10:38:26Z @@ -19430,6 +19562,8 @@ def: "A secondary thickening meristem (PO:0025414) that is part of a stem (PO:00 synonym: "meristema de engrosamiento secundario del tallo (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "茎二次肥厚分裂細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025414 ! secondary thickening meristem +intersection_of: PO:0025414 ! secondary thickening meristem +intersection_of: part_of PO:0009047 ! stem relationship: part_of PO:0009047 ! stem created_by: rwalls creation_date: 2012-03-01T12:10:45Z @@ -19442,6 +19576,8 @@ def: "A secondary thickening meristem (PO:0025414) that is part of a root (PO:00 synonym: "meristema de engrosamiento secundario de la raíz (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "根二次肥厚分裂組織 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025414 ! secondary thickening meristem +intersection_of: PO:0025414 ! secondary thickening meristem +intersection_of: part_of PO:0009005 ! root relationship: part_of PO:0009005 ! root created_by: rwalls creation_date: 2012-03-01T12:10:45Z @@ -19468,6 +19604,8 @@ synonym: "elemento de tráquea del xilema secundario (Spanish)" EXACT Spanish synonym: "二次木質部仮導管要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:440 is_a: PO:0000290 ! tracheary element +intersection_of: PO:0000290 ! tracheary element +intersection_of: part_of PO:0005848 ! secondary xylem relationship: part_of PO:0005848 ! secondary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19493,7 +19631,8 @@ synonym: "traqueida del xilema secundario (Spanish)" EXACT Spanish [POC:Maria_Al synonym: "二次木質部仮導管 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0000301 ! tracheid is_a: PO:0025445 ! secondary xylem tracheary element -relationship: part_of PO:0005848 ! secondary xylem +intersection_of: PO:0000301 ! tracheid +intersection_of: part_of PO:0005848 ! secondary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19505,6 +19644,8 @@ def: "A xylem vessel member (PO:0002003) that is part of a primary xylem tissue synonym: "elemento vaso del xilema primario (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次木質部導管状要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0002003 ! xylem vessel member +intersection_of: PO:0002003 ! xylem vessel member +intersection_of: part_of PO:0005849 ! primary xylem relationship: part_of PO:0005849 ! primary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19518,7 +19659,8 @@ synonym: "elemento vaso del xilema secundario (Spanish)" EXACT Spanish [POC:Mari synonym: "二次木質部導管要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0002003 ! xylem vessel member is_a: PO:0025445 ! secondary xylem tracheary element -relationship: part_of PO:0005848 ! secondary xylem +intersection_of: PO:0002003 ! xylem vessel member +intersection_of: part_of PO:0005848 ! secondary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19530,6 +19672,8 @@ def: "A xylem vessel (PO:0025417) that is part of a primary xylem tissue (PO:000 synonym: "vaso del xilema primario (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次木質部導管 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025417 ! xylem vessel +intersection_of: PO:0025417 ! xylem vessel +intersection_of: part_of PO:0005849 ! primary xylem relationship: part_of PO:0005849 ! primary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19542,6 +19686,8 @@ def: "A xylem vessel (PO:0025417) that is part of a portion of secondary xylem t synonym: "vaso del xilema secundario (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "二次木質部導管 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025417 ! xylem vessel +intersection_of: PO:0025417 ! xylem vessel +intersection_of: part_of PO:0005848 ! secondary xylem relationship: part_of PO:0005848 ! secondary xylem created_by: rwalls creation_date: 2012-03-05T11:06:18Z @@ -19555,6 +19701,8 @@ synonym: "elemento criboso del floema primario (Spanish)" EXACT Spanish [POC:Mar synonym: "一次師部 師（篩）要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:439 is_a: PO:0025406 ! sieve element +intersection_of: PO:0025406 ! sieve element +intersection_of: part_of PO:0006075 ! primary phloem relationship: part_of PO:0006075 ! primary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19568,6 +19716,8 @@ synonym: "elemento criboso del floema secundario (Spanish)" EXACT Spanish [POC:M synonym: "二次師部（師管部） 篩要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:439 is_a: PO:0025406 ! sieve element +intersection_of: PO:0025406 ! sieve element +intersection_of: part_of PO:0005043 ! secondary phloem relationship: part_of PO:0005043 ! secondary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19582,7 +19732,8 @@ synonym: "一次師部 師（篩）細胞 (Japanese)" EXACT Japanese [NIG:Yukiko xref: PO_GIT:439 is_a: PO:0025415 ! sieve cell is_a: PO:0025452 ! primary phloem sieve element -relationship: part_of PO:0006075 ! primary phloem +intersection_of: PO:0025415 ! sieve cell +intersection_of: part_of PO:0006075 ! primary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19598,7 +19749,8 @@ synonym: "一次師部 師（篩）管 (Japanese)" EXACT Japanese [NIG:Yukiko_Ya xref: PO_GIT:439 is_a: PO:0000289 ! sieve tube element is_a: PO:0025452 ! primary phloem sieve element -relationship: part_of PO:0006075 ! primary phloem +intersection_of: PO:0000289 ! sieve tube element +intersection_of: part_of PO:0006075 ! primary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19612,7 +19764,8 @@ synonym: "二次師部（師管部）篩細胞 (Japanese)" EXACT Japanese [NIG:Y xref: PO_GIT:439 is_a: PO:0025415 ! sieve cell is_a: PO:0025453 ! secondary phloem sieve element -relationship: part_of PO:0005043 ! secondary phloem +intersection_of: PO:0025415 ! sieve cell +intersection_of: part_of PO:0005043 ! secondary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19628,7 +19781,8 @@ synonym: "二次師部（師管部） 篩管要素 (Japanese)" EXACT Japanese [N xref: PO_GIT:439 is_a: PO:0000289 ! sieve tube element is_a: PO:0025453 ! secondary phloem sieve element -relationship: part_of PO:0005043 ! secondary phloem +intersection_of: PO:0000289 ! sieve tube element +intersection_of: part_of PO:0005043 ! secondary phloem created_by: rwalls creation_date: 2012-03-12T02:41:15Z @@ -19686,6 +19840,8 @@ synonym: "earlywood tracheary element" EXACT [] synonym: "早材管状要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:451 is_a: PO:0025445 ! secondary xylem tracheary element +intersection_of: PO:0000290 ! tracheary element +intersection_of: part_of PO:0004515 ! early wood relationship: part_of PO:0004515 ! early wood created_by: rwalls creation_date: 2012-03-14T11:05:40Z @@ -19701,6 +19857,8 @@ synonym: "latewood tracheary element" EXACT [] synonym: "晩材管状要素 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:451 is_a: PO:0025445 ! secondary xylem tracheary element +intersection_of: PO:0000290 ! tracheary element +intersection_of: part_of PO:0004516 ! late wood relationship: part_of PO:0004516 ! late wood created_by: rwalls creation_date: 2012-03-14T11:05:40Z @@ -19865,7 +20023,7 @@ creation_date: 2012-03-22T03:42:34Z id: PO:0025476 name: tuberous root tuber namespace: plant_anatomy -def: "A tuber (PO:0004543) that develops from a tuberous root (PO:0025523) and is further radially enlarged." [POC:curators] +def: "A root (PO:0009005) that develops from a tuberous root (PO:0025523) and is further radially enlarged for storage." [PO:cooperl, POC:curators] comment: Functions in storage. This term should be used for tubers derived from roots (PO:0009005), as found in Cassava or sweet potato (Ipomoea batatas), not for tubers derived from branches (PO:0025073), as found in potatoes and yams. Use the term shoot axis tuber (PO:0004543), aerial tuber (PO:0004548), or subterranean tuber (PO:0004547) for tubers derived from branches. A tuberous root tuber may be distinguished from a tuber that is derived from a branch by the presence of a root cap (PO:0020123) early in development, or the presence of lateral roots (PO:0020121) or their remnants. Sometimes tuber roots bear vegetative buds (PO:0000058) like a tuber derived from a branch. A tuberous root tuber usually develops from a shoot-borne root (PO:0000042) or a lateral root (PO:0020121). synonym: "raíz tubercular (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "root tuber" EXACT [] @@ -19873,6 +20031,7 @@ synonym: "storage root" EXACT [] synonym: "tuber root" RELATED [] synonym: "塊茎根の塊茎(Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:47 +is_a: PO:0009005 ! root is_a: PO:0025522 ! tuber created_by: rwalls creation_date: 2012-04-26T02:09:03Z @@ -20358,7 +20517,8 @@ synonym: "器官 葉身 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:428 is_a: PO:0025001 ! cardinal organ part is_a: PO:0025060 ! lamina -relationship: part_of PO:0009008 ! plant organ +intersection_of: PO:0025060 ! lamina +intersection_of: part_of PO:0009008 ! plant organ created_by: rwalls creation_date: 2012-10-17T15:51:02Z @@ -20409,6 +20569,8 @@ comment: A leaf lobe may be either rounded or angular at the tip, and may have l synonym: "lóbulo de la lámina de la hoja (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "葉身裂片(Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025514 ! phyllome lamina lobe +intersection_of: PO:0025514 ! phyllome lamina lobe +intersection_of: part_of PO:0025034 ! leaf relationship: part_of PO:0025034 ! leaf created_by: rwalls creation_date: 2012-10-17T16:40:42Z @@ -20423,6 +20585,8 @@ synonym: "diente de la lámina de la hoja (Spanish)" EXACT Spanish [POC:Maria_Al synonym: "leaf lamina teeth" EXACT Plural [] synonym: "葉身歯 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025515 ! phyllome lamina tooth +intersection_of: PO:0025515 ! phyllome lamina tooth +intersection_of: part_of PO:0025034 ! leaf relationship: part_of PO:0025034 ! leaf created_by: rwalls creation_date: 2012-10-17T16:41:41Z @@ -20439,6 +20603,8 @@ synonym: "leaf lamina crenule" NARROW [POC:Maria_Alejandra_Gandolfo] synonym: "leaf lamina scallop" EXACT [] synonym: "葉身鈍鋸歯 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025516 ! phyllome lamina crena +intersection_of: PO:0025516 ! phyllome lamina crena +intersection_of: part_of PO:0025034 ! leaf relationship: part_of PO:0025034 ! leaf created_by: rwalls creation_date: 2012-10-17T16:41:57Z @@ -21081,7 +21247,7 @@ creation_date: 2013-05-29T11:58:32Z id: PO:0025570 name: vascular leaf development stage namespace: plant_structure_development_stage -def: "A leaf development stage (PO:0001050) which begins with the onset of the vascular leaf initiation stage (PO:0001051) and ends with the termination of the vascular leaf senescence stage (PO:0001054)." [POC:Brian_Atkinson, POC:Laurel_Cooper] +def: "A leaf development stage (PO:0001050) that occurs during the interval between the onset of the vascular leaf initiation stage (PO:0001051) and the termination of the vascular leaf senescent stage (PO:0001054)." [POC:Brian_Atkinson, POC:Laurel_Cooper] comment: In some plants, the leaf developmental stages may occur in the same leaf simultaneously. For example, leaves maize (or other grasses) have various zones where stages are occurring along the length of the lamina. xref: PO_GIT:555 is_a: PO:0001050 ! leaf development stage @@ -21627,6 +21793,17 @@ is_a: PO:0025022 ! collective leaf structure created_by: meiera creation_date: 2015-09-23T15:41:20Z +[Term] +id: PO:0025616 +name: lemma apiculus +namespace: plant_anatomy +def: "A cardinal organ part (PO:0025001) which is a short, abrupt, flexible point at the apex of the lemma (PO:0009037)." [PO:cooperl] +xref: PO_GIT:627 +is_a: PO:0025001 ! cardinal organ part +relationship: part_of PO:0009037 ! lemma +created_by: cooperl +creation_date: 2016-03-16T14:41:36Z + [Term] id: PO:0028001 name: plant life cycle phase @@ -22010,6 +22187,8 @@ synonym: "茎葉体分裂組織の頂端細胞 (Japanese)" EXACT Japanese [NIG:Y xref: PO_GIT:303 is_a: PO:0030009 ! shoot meristematic apical cell is_a: PO:0030014 ! gametophyte meristematic apical cell +intersection_of: PO:0030009 ! shoot meristematic apical cell +intersection_of: part_of PO:0030018 ! gametophore relationship: part_of PO:0030018 ! gametophore created_by: rwalls creation_date: 2011-03-25T10:45:12Z @@ -22028,6 +22207,8 @@ synonym: "non-vascular shoot axis" EXACT [] synonym: "茎葉体軸 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:289 is_a: PO:0025029 ! shoot axis +intersection_of: PO:0025029 ! shoot axis +intersection_of: part_of PO:0030018 ! gametophore relationship: part_of PO:0030018 ! gametophore created_by: rwalls creation_date: 2011-03-25T10:57:31Z @@ -22047,7 +22228,6 @@ synonym: "茎葉体枝 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:289 is_a: PO:0025073 ! branch is_a: PO:0030020 ! gametophore axis -relationship: part_of PO:0030018 ! gametophore created_by: rwalls creation_date: 2011-03-25T11:13:48Z @@ -22066,7 +22246,6 @@ synonym: "茎葉体の茎 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:289 is_a: PO:0009047 ! stem is_a: PO:0030020 ! gametophore axis -relationship: part_of PO:0030018 ! gametophore created_by: rwalls creation_date: 2011-03-25T11:17:24Z From 0d5e571a302f4ada4bb9f8db7f40e3bddf167f72 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie-Ang=C3=A9lique=20Laporte?= Date: Wed, 31 Aug 2016 17:31:07 +0200 Subject: [PATCH 2/2] Update .travis.yml --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index fc74d41..08abc64 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,6 +1,6 @@ language: java jdk: - - openjdk7 + - oraclejdk8 before_script: - mkdir -p bin