diff --git a/po.obo b/po.obo index a8f639b..90c8067 100644 --- a/po.obo +++ b/po.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2019-06-05 +data-version: releases/2020-06-04 saved-by: cooperl subsetdef: Angiosperm "Term for angiosperms" subsetdef: Arabidopsis "Term used for Arabidopsis" @@ -2661,7 +2661,7 @@ relationship: part_of PO:0003017 ! root cap of primary root id: PO:0003022 name: lateral root cap of primary root namespace: plant_anatomy -def: "A central root cap that is part of a root cap of primary root." [POC:curators, TAIR_curator:Katica_Ilic] +def: "A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127)." [PO:cooperl, POC:curators, TAIR_curator:Katica_Ilic] synonym: "caliptra de la raíz lateral de la raíz primaria (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次根の側根冠 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:194 @@ -2688,8 +2688,8 @@ relationship: part_of PO:0009005 ! root id: PO:0003024 name: stolon namespace: plant_anatomy -def: "A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes." [APweb:Glossary, POC:curators] -comment: The stolon develops from an axillary bud and produces adventitious roots at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. A unique part of this process is that the first internode of a stolon is very long and then the shoot becomes an erect rosette. +def: "A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots." [APweb:Glossary, POC:curators] +comment: The stolon develops from an axillary bud (PO:0004709) and produces adventitious roots (PO:0003005) at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. Stolons may be above ground, as with strawberries, or below ground as in potatoes. subset: reference subset: TraitNet synonym: "estolón (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] @@ -10584,7 +10584,7 @@ name: plant structure development stage namespace: plant_structure_development_stage alt_id: PO:0007021 def: "A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes." [BFO:0000003, GO:0032502, POC:curators] -comment: Refers to GO:0032502 'developmental process', which includies growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. +comment: Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. subset: TraitNet synonym: "Arabidopsis growth (related)" RELATED [TAIR:0000205] synonym: "etapa de desarrollo de estructura vegetal (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] @@ -15023,7 +15023,7 @@ id: PO:0025096 name: carpel epidermis namespace: plant_anatomy def: "A portion of phyllome epidermis (PO:0025157) that is part of a carpel (PO:0009030)." [POC:Ramona_Walls] -synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). \" (broad)" BROAD [] +synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). (broad)" BROAD [] synonym: "epidermis del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "心皮 表皮 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis @@ -16634,7 +16634,7 @@ creation_date: 2010-12-17T10:28:52Z id: PO:0025208 name: carpel trichome namespace: plant_anatomy -def: "A phyllome trichome that is part of a bract epidermis." [POC:Ramona_Walls] +def: "A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096)." [PO:cooperl, POC:Ramona_Walls] synonym: "tricoma del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "心皮毛（毛茸、糸状体） (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025186 ! phyllome trichome @@ -17172,7 +17172,7 @@ id: PO:0025248 name: pseudostem namespace: plant_anatomy def: "A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths." [POC:Ramona_Walls] -comment: The peduncle later grows up through the psuedostem. Common in Musa species and some other monocots. +comment: The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots. subset: Musa synonym: "pseudotallo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "偽茎 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] @@ -22292,6 +22292,7 @@ creation_date: 2017-08-17T14:41:36Z [Term] id: PO:0025622 name: metaxylem vessel member +namespace: plant_anatomy def: "A primary xylem vessel member (PO:0025448) that is part of the metaxylem (PO:0000372)." [PO:Laurel_Cooper] synonym: "metaxylem vessel element (exact)" EXACT [] xref: PO_GIT:678 @@ -23919,6 +23920,7 @@ is_a: PO:0000042 ! shoot-borne root [Term] id: PO:0030090 name: root periderm scar +namespace: plant_anatomy def: "A portion of root periderm (PO:0005047) formed in response to a disruption of the root epidermis (PO:0006036)." [ISBN:0471738433, NYBG:Brandon_Sinn, NYBG:Dario_Cavaliere, PO_REF:00016] comment: Root periderm scars are lenticel-like structures on the tuberous roots (PO:0025523), primary roots (PO:0020127), and/or tuberous root tubers (PO:0025476) of plants such as sweet potato, cassava, parsnips, and carrots. Disruption of the epidermis by the emergence of a lateral root initiates a wound response which results in the production of a root periderm scar. Gas exchange does not occur through a root periderm scar. xref: PO_GIT:635 diff --git a/po.owl b/po.owl index d5f79d6..81b0a2c 100644 --- a/po.owl +++ b/po.owl @@ -12,7 +12,7 @@ xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:po="http://purl.obolibrary.org/obo/po#"> - + CL part_of NCBITaxon:33090 @@ -8986,7 +8986,7 @@ - A central root cap that is part of a root cap of primary root. + A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127). PO_GIT:194 caliptra de la ra&#237z lateral de la ra&#237z primaria (Spanish, exact) 一次根の側根冠 (Japanese, exact) @@ -8997,7 +8997,8 @@ - A central root cap that is part of a root cap of primary root. + A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127). + PO:cooperl POC:curators TAIR_curator:Katica_Ilic @@ -9079,7 +9080,7 @@ - A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes. + A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots. PO_GIT:388 estol&#243n (Spanish, exact) ストロン、ほふく茎 (Japanese, exact) @@ -9088,13 +9089,13 @@ PO:0003024 - The stolon develops from an axillary bud and produces adventitious roots at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. A unique part of this process is that the first internode of a stolon is very long and then the shoot becomes an erect rosette. + The stolon develops from an axillary bud (PO:0004709) and produces adventitious roots (PO:0003005) at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. Stolons may be above ground, as with strawberries, or below ground as in potatoes. stolon - A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes. + A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots. APweb:Glossary POC:curators @@ -38217,7 +38218,7 @@ Arabidopsis growth (related) PO:0009012 - Refers to GO:0032502 'developmental process', which includies growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. + Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. plant structure development stage @@ -52680,7 +52681,7 @@ A portion of phyllome epidermis (PO:0025157) that is part of a carpel (PO:0009030). rwalls 2010-12-17T12:36:46Z - A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). " (broad) + A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). (broad) epidermis del carpelo (Spanish, exact) 心皮 表皮 (Japanese, exact) plant_anatomy @@ -58003,7 +58004,7 @@ - A phyllome trichome that is part of a bract epidermis. + A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096). rwalls 2010-12-17T02:04:36Z tricoma del carpelo (Spanish, exact) @@ -58015,7 +58016,8 @@ - A phyllome trichome that is part of a bract epidermis. + A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096). + PO:cooperl POC:Ramona_Walls @@ -59700,7 +59702,7 @@ plant_anatomy PO:0025248 - The peduncle later grows up through the psuedostem. Common in Musa species and some other monocots. + The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots. pseudostem @@ -74723,7 +74725,7 @@ these may not begin or end simultaneously. Not all seeds go through a seed dorma 2017-08-17T14:41:36Z PO_GIT:678 metaxylem vessel element (exact) - plant_ontology + plant_anatomy PO:0025622 metaxylem vessel member @@ -79236,7 +79238,7 @@ these may not begin or end simultaneously. Not all seeds go through a seed dorma A portion of root periderm (PO:0005047) formed in response to a disruption of the root epidermis (PO:0006036). PO_GIT:635 - plant_ontology + plant_anatomy PO:0030090 Root periderm scars are lenticel-like structures on the tuberous roots (PO:0025523), primary roots (PO:0020127), and/or tuberous root tubers (PO:0025476) of plants such as sweet potato, cassava, parsnips, and carrots. Disruption of the epidermis by the emergence of a lateral root initiates a wound response which results in the production of a root periderm scar. Gas exchange does not occur through a root periderm scar. root periderm scar diff --git a/subsets/po-basic.obo b/subsets/po-basic.obo index 7494b0f..5f149b7 100644 --- a/subsets/po-basic.obo +++ b/subsets/po-basic.obo @@ -2594,7 +2594,7 @@ relationship: part_of PO:0003017 ! root cap of primary root id: PO:0003022 name: lateral root cap of primary root namespace: plant_anatomy -def: "A central root cap that is part of a root cap of primary root." [POC:curators, TAIR_curator:Katica_Ilic] +def: "A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127)." [PO:cooperl, POC:curators, TAIR_curator:Katica_Ilic] synonym: "caliptra de la raíz lateral de la raíz primaria (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "一次根の側根冠 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] xref: PO_GIT:194 @@ -2619,8 +2619,8 @@ relationship: part_of PO:0009005 ! root id: PO:0003024 name: stolon namespace: plant_anatomy -def: "A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes." [APweb:Glossary, POC:curators] -comment: The stolon develops from an axillary bud and produces adventitious roots at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. A unique part of this process is that the first internode of a stolon is very long and then the shoot becomes an erect rosette. +def: "A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots." [APweb:Glossary, POC:curators] +comment: The stolon develops from an axillary bud (PO:0004709) and produces adventitious roots (PO:0003005) at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. Stolons may be above ground, as with strawberries, or below ground as in potatoes. subset: reference subset: TraitNet synonym: "estolón (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] @@ -10429,7 +10429,7 @@ name: plant structure development stage namespace: plant_structure_development_stage alt_id: PO:0007021 def: "A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes." [BFO:0000003, GO:0032502, POC:curators] -comment: Refers to GO:0032502 'developmental process', which includies growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. +comment: Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. subset: TraitNet synonym: "Arabidopsis growth (related)" RELATED [TAIR:0000205] synonym: "etapa de desarrollo de estructura vegetal (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] @@ -14802,7 +14802,7 @@ id: PO:0025096 name: carpel epidermis namespace: plant_anatomy def: "A portion of phyllome epidermis (PO:0025157) that is part of a carpel (PO:0009030)." [POC:Ramona_Walls] -synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). \" (broad)" BROAD [] +synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). (broad)" BROAD [] synonym: "epidermis del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "心皮 表皮 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025157 ! phyllome epidermis @@ -16396,7 +16396,7 @@ creation_date: 2010-12-17T10:28:52Z id: PO:0025208 name: carpel trichome namespace: plant_anatomy -def: "A phyllome trichome that is part of a bract epidermis." [POC:Ramona_Walls] +def: "A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096)." [PO:cooperl, POC:Ramona_Walls] synonym: "tricoma del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "心皮毛（毛茸、糸状体） (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] is_a: PO:0025186 ! phyllome trichome @@ -16919,7 +16919,7 @@ id: PO:0025248 name: pseudostem namespace: plant_anatomy def: "A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths." [POC:Ramona_Walls] -comment: The peduncle later grows up through the psuedostem. Common in Musa species and some other monocots. +comment: The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots. subset: Musa synonym: "pseudotallo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo] synonym: "偽茎 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki] @@ -21930,6 +21930,7 @@ creation_date: 2017-08-17T14:41:36Z [Term] id: PO:0025622 name: metaxylem vessel member +namespace: plant_anatomy def: "A primary xylem vessel member (PO:0025448) that is part of the metaxylem (PO:0000372)." [PO:Laurel_Cooper] synonym: "metaxylem vessel element (exact)" EXACT [] xref: PO_GIT:678 @@ -23502,6 +23503,7 @@ is_a: PO:0000042 ! shoot-borne root [Term] id: PO:0030090 name: root periderm scar +namespace: plant_anatomy def: "A portion of root periderm (PO:0005047) formed in response to a disruption of the root epidermis (PO:0006036)." [ISBN:0471738433, NYBG:Brandon_Sinn, NYBG:Dario_Cavaliere, PO_REF:00016] comment: Root periderm scars are lenticel-like structures on the tuberous roots (PO:0025523), primary roots (PO:0020127), and/or tuberous root tubers (PO:0025476) of plants such as sweet potato, cassava, parsnips, and carrots. Disruption of the epidermis by the emergence of a lateral root initiates a wound response which results in the production of a root periderm scar. Gas exchange does not occur through a root periderm scar. xref: PO_GIT:635