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terms to add the the exposure-x.csv files #101

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marieALaporte opened this issue Jun 15, 2017 · 2 comments
Open

terms to add the the exposure-x.csv files #101

marieALaporte opened this issue Jun 15, 2017 · 2 comments
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@marieALaporte
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terms that are in the eo.tsv but not in the exposure csvs
the atom ones need to be replaced by ion

EO:0007242	iron nutrient regimen	CHEBI:18248	iron atom
EO:0007387	manganese nutrient regimen	CHEBI:18291	manganese atom
EO:0007297	calcium nutrient regimen	CHEBI:22984	calcium atom
EO:0007244	chlorine nutrient regimen	CHEBI:23116	chlorine atom
EO:0007225	fluorine nutrient regimen	CHEBI:24061	fluorine atom
EO:0007230	iodine nutrient regimen	CHEBI:24859	iodine atom
EO:0007288	magnesium nutrient regimen	CHEBI:25107	magnesium atom
EO:0007284	nitrogen macronutrient regimen	CHEBI:25555	nitrogen atom
EO:0007293	potassium nutrient regimen	CHEBI:26216	potassium atom
EO:0007295	sulfur nutrient regimen	CHEBI:26833	sulfur atom
EO:0007309	zinc nutrient regimen	CHEBI:27363	zinc atom
EO:0007273	boron nutrient regimen	CHEBI:27560	boron atom
EO:0007232	selenium nutrient regimen	CHEBI:27568	selenium atom
EO:0007235	silicon nutrient regimen	CHEBI:27573	silicon atom
EO:0007303	carbon nutrient regimen	CHEBI:27594	carbon atom
EO:0007276	cobalt nutrient regimen	CHEBI:27638	cobalt atom
EO:0007228	chromium nutrient regimen	CHEBI:28073	chromium atom
EO:0007397	phosphorus nutrient regimen	CHEBI:28659	phosphorus atom
EO:0007253	molybdenum nutrient regimen	CHEBI:28685	molybdenum atom
EO:0007261	copper nutrient regimen	CHEBI:28694	copper atom
EO:0007306	aluminum nutrient regimen	CHEBI:28984	aluminium atom
EO:0007134	acidic pH growth media environment	CHEBI:37527	acid
EO:0007195	rice ragged stunt virus	NCBITaxon:42475	rice ragged stunt virus
EO:0007362	Balansia oryzae-sativae	NCBITaxon:116609	Ephelis japonica
EO:0007305	Cnaphalocrocis medinalis	NCBITaxon:437488	Cnaphalocrocis medinalis
EO:0007296	Dicladispa armigera	NCBITaxon:111238	Dicladispa armigera
EO:0007212	Mycoplasma	NCBITaxon:2093	Mycoplasma
EO:0007308	Nephotettix spp	NCBITaxon:94399	Nephotettix 
@cmungall
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Is an X nutrient regimen the same as an X regimen always?

@marieALaporte
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That's a good point.
I think that in the context of EO, it is the same. the X nutrient treatment is an X treatment.
A 'plant nutrient treatment' is defined as 'A plant chemical treatment (EO:0007189) involving a plant nutrient or a combination of plant nutrients.'. The assumption here is that the chemicals listed under that are considered as nutrients for a plant. Or at least, this is my understanding of the EO hierarchy. I see the nutrient part of the classes as being useful for classification purposes.

But I can see the example when after a certain amount of the chemical, the chemical would not have the role of nutrient and could maybe start to hurt the plant.

@cmungall do you really think that they should be modelled differently ?

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