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soybean-trait-ontology.obo
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soybean-trait-ontology.obo
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format-version: 1.2
auto-generated-by: java
default-namespace: cco
[Term]
id: CO_336:0000000
name: flowering time
namespace: SoybeanTrait
def: "Anthesis or flowering time is the period during which a flower is fully open and functional. Pollination and fertilization occur during this period." []
synonym: "FlwT" EXACT []
synonym: "Open flower" EXACT []
is_a: CO_336:Phenological_traits ! Phenological_traits
[Term]
id: CO_336:0000001
name: days to 50% flowering count
namespace: SoybeanMethod
def: "Count the number of days after sowing until 50% of the plants have one or more flowers" []
is_a: CO_336:Counting ! Counting
relationship: method_of CO_336:0000000 ! flowering time
[Term]
id: CO_336:0000002
name: day
namespace: SoybeanScale
is_a: CO_336:Duration ! Duration
relationship: scale_of CO_336:0000001 ! days to 50% flowering count
relationship: scale_of CO_336:0000022 ! days to maturity count
relationship: scale_of CO_336:0000061 ! reproductive period duration measurement
relationship: scale_of CO_336:0000088 ! counting days of seed fill
relationship: scale_of CO_336:0000157 ! plant germination count
relationship: scale_of CO_336:0000166 ! first flower date method
relationship: scale_of CO_336:0000166 ! first flower date method
relationship: scale_of CO_336:0000172 ! maturity days count
relationship: scale_of CO_336:0000175 ! full maturity count
relationship: scale_of CO_336:0000175 ! full maturity count
[Term]
id: CO_336:0000003
name: bacterial pustule
namespace: SoybeanTrait
def: "V-shaped chlorotic to necrotic foliar lesions,vascular blackening, Light colored, raised pustules which can coalesce into brown lesions, caused by Xanthomonas sp." []
synonym: "Bacterial Pustule" EXACT []
synonym: "BP" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000004
name: bacterial pustle assessment
namespace: SoybeanMethod
def: "visual assessment of 1-5 affected plants with bacterial pustule" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000003 ! bacterial pustule
[Term]
id: CO_336:0000005
name: 1-5 infection score
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000004 ! bacterial pustle assessment
[Term]
id: CO_336:0000005:1
name: 0% lesions on plants
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000005 ! 1-5 infection score
[Term]
id: CO_336:0000005:2
name: 1-10% lesions on plants
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000005 ! 1-5 infection score
[Term]
id: CO_336:0000005:3
name: 10-25% lesions on the plants
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000005 ! 1-5 infection score
[Term]
id: CO_336:0000005:4
name: 25-50% lesions on the plants
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000005 ! 1-5 infection score
[Term]
id: CO_336:0000005:5
name: >50% plants with lesions
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000005 ! 1-5 infection score
[Term]
id: CO_336:0000006
name: soybean rust
namespace: SoybeanTrait
def: "Tan and reddish brown lesions on leaves, pods or whole plant caused by Phakopsora Pachyrhizi" []
synonym: "Asian rust" EXACT []
synonym: "RUST" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000007
name: rust assessment
namespace: SoybeanMethod
def: "Visual assessment of 1-5 affected plants with rust" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000006 ! soybean rust
[Term]
id: CO_336:0000008
name: 1-5 infection score
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000007 ! rust assessment
[Term]
id: CO_336:0000008:1
name: 0% lesions on plants
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000008 ! 1-5 infection score
[Term]
id: CO_336:0000008:2
name: 1-10% lesions on plants
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000008 ! 1-5 infection score
[Term]
id: CO_336:0000008:3
name: 10-25% lesions on the plants
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000008 ! 1-5 infection score
[Term]
id: CO_336:0000008:4
name: 25-50% lesions on the plants
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000008 ! 1-5 infection score
[Term]
id: CO_336:0000008:5
name: >50% plants with lesions
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000008 ! 1-5 infection score
[Term]
id: CO_336:0000009
name: soybean mosaic virus
namespace: SoybeanTrait
def: "Stunting of plants and crinkled and mottling of leaves" []
synonym: "SMV" EXACT []
synonym: "Viral infection, SMV" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000010
name: smv assessment
namespace: SoybeanMethod
def: "Visual assessment of 1-5 affected plants / plot" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000009 ! soybean mosaic virus
[Term]
id: CO_336:0000011
name: 1-5 infection score
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000010 ! smv assessment
[Term]
id: CO_336:0000011:1
name: 0% virus symptom seen
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000011 ! 1-5 infection score
[Term]
id: CO_336:0000011:2
name: 1-10% occaional mild symptoms
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000011 ! 1-5 infection score
[Term]
id: CO_336:0000011:3
name: 10-25% moderate infection
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000011 ! 1-5 infection score
[Term]
id: CO_336:0000011:4
name: 25-50% severe and widespread symptoms
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000011 ! 1-5 infection score
[Term]
id: CO_336:0000011:5
name: >50% with likely loss in yield
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000011 ! 1-5 infection score
[Term]
id: CO_336:0000012
name: frogeye leafspot
namespace: SoybeanTrait
def: "Tan or brown, elliptical lesions with brown purple boarder on plant parts caused by Cercospora Sojina" []
synonym: "FROGEYE" EXACT []
synonym: "Frogeye" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000013
name: frog eye assessment
namespace: SoybeanMethod
def: "Visual assessment of 1-5 affected leaf area with frog eye" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000012 ! frogeye leafspot
[Term]
id: CO_336:0000014
name: 1-5 infection score
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000013 ! frog eye assessment
[Term]
id: CO_336:0000014:1
name: 0% leaf spot seen
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000014 ! 1-5 infection score
[Term]
id: CO_336:0000014:2
name: few spots on some plants
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000014 ! 1-5 infection score
[Term]
id: CO_336:0000014:3
name: 10-25% some spots on most plants
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000014 ! 1-5 infection score
[Term]
id: CO_336:0000014:4
name: 25-50% infection
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000014 ! 1-5 infection score
[Term]
id: CO_336:0000014:5
name: >50% infection with leaf abscision
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000014 ! 1-5 infection score
[Term]
id: CO_336:0000015
name: nodulation
namespace: SoybeanTrait
def: "Root nodule formation due to interaction with microorganisms." []
synonym: "NODULE" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000016
name: nodulation proportion observation
namespace: SoybeanMethod
def: "Visual assessment of the proportion of nodules" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000015 ! nodulation
[Term]
id: CO_336:0000017
name: 1 to 5 percentage scale
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000016 ! nodulation proportion observation
[Term]
id: CO_336:0000017:1
name: 0% nodules
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000017 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000017:2
name: 1-10%few nodules mostly small
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000017 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000017:3
name: 10-25% nodules some large
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000017 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000017:4
name: 25-50% nodules several large
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000017 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000017:5
name: >50% nodules many large
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000017 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000018
name: root knot nematode
namespace: SoybeanTrait
def: "Large galls or knots on the root system caused by Meloidogyne Spp" []
synonym: "Root knot nematode" EXACT []
synonym: "ROOTKNOT" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000019
name: root knot assessment
namespace: SoybeanMethod
def: "Visual assessment of 1-5 of nematode knots" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000018 ! root knot nematode
[Term]
id: CO_336:0000020
name: 1-5 infection score
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000019 ! root knot assessment
[Term]
id: CO_336:0000020:1
name: 0% root knot galling
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000020 ! 1-5 infection score
[Term]
id: CO_336:0000020:2
name: 1-10% few galls on some plants
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000020 ! 1-5 infection score
[Term]
id: CO_336:0000020:3
name: 10-25% galls on most plants
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000020 ! 1-5 infection score
[Term]
id: CO_336:0000020:4
name: 25-50% galls on most plants
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000020 ! 1-5 infection score
[Term]
id: CO_336:0000020:5
name: >50% galling with plants stunting
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000020 ! 1-5 infection score
[Term]
id: CO_336:0000021
name: maturity time
namespace: SoybeanTrait
def: "Time when pods have changed to final color." []
synonym: "MatTime" EXACT []
synonym: "Maturity" EXACT []
is_a: CO_336:Phenological_traits ! Phenological_traits
[Term]
id: CO_336:0000022
name: days to maturity count
namespace: SoybeanMethod
def: "Determine the number of days elapsed between sowing and when the pods have reached maturity" []
is_a: CO_336:Counting ! Counting
relationship: method_of CO_336:0000021 ! maturity time
[Term]
id: CO_336:0000024
name: height of lowest pods
namespace: SoybeanTrait
def: "Height from soil surface to first pod" []
synonym: "HLP" EXACT []
is_a: CO_336:Morphological_traits ! Morphological_traits
[Term]
id: CO_336:0000025
name: stalk height measurement
namespace: SoybeanMethod
def: "Length of stem" []
is_a: CO_336:Measurement ! Measurement
relationship: method_of CO_336:0000024 ! height of lowest pods
[Term]
id: CO_336:0000026
name: cm
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000025 ! stalk height measurement
relationship: scale_of CO_336:0000028 ! plant height measurement
relationship: scale_of CO_336:0000163 ! height average of plants
[Term]
id: CO_336:0000027
name: plant height
namespace: SoybeanTrait
def: "Height of the plant i.e., the length from the soil surface to top main stem (not petioles and leaves) node" []
synonym: "Height" EXACT []
synonym: "PTHT" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000028
name: plant height measurement
namespace: SoybeanMethod
def: "Length of the plant at harvest" []
is_a: CO_336:Measurement ! Measurement
relationship: method_of CO_336:0000027 ! plant height
[Term]
id: CO_336:0000030
name: lodging
namespace: SoybeanTrait
def: "Tendency of plant to lodge" []
synonym: "LODGING" EXACT []
synonym: "Plants lying on the ground" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000031
name: lodging estimation
namespace: SoybeanMethod
def: "Estimate the proportion of plants lodged i.e., protrated on the ground" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000030 ! lodging
[Term]
id: CO_336:0000032
name: 1 to 5 percentage scale
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000031 ! lodging estimation
[Term]
id: CO_336:0000032:1
name: Almost all plants erect
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000032 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000032:2
name: All plants leaning slightly or a few plants down
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000032 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000032:3
name: All plants leaning moderately (45 degrees), or 25% - 50% of plants down
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000032 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000032:4
name: All plants leaning considerably, or 50% - 80% of plants down
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000032 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000032:5
name: Prostrate, almost all plants down
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000032 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000033
name: plants harvested
namespace: SoybeanTrait
def: "The number of plants harvested contributing to the yield" []
synonym: "PTHARV" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000034
name: number of plants harvested in the net plot, excluding the borders
namespace: SoybeanMethod
def: "Number of plants harvested in the net plot, excluding the borders" []
is_a: CO_336:Counting ! Counting
relationship: method_of CO_336:0000033 ! plants harvested
[Term]
id: CO_336:0000035
name: Plant
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000034 ! number of plants harvested in the net plot, excluding the borders
[Term]
id: CO_336:0000036
name: seed yield
namespace: SoybeanTrait
def: "Yield of a soybean field in terms of seed weight per unit area at a specified moisture content." []
synonym: "Plot Yield, Seed weight" EXACT []
synonym: "SdYld" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000037
name: weighing of grain per plot
namespace: SoybeanMethod
def: "Weigh the amount of harvested grains (excluding the borders) adjusted to 13% moisture," []
is_a: CO_336:Measurement ! Measurement
relationship: method_of CO_336:0000036 ! seed yield
[Term]
id: CO_336:0000038
name: g/plot
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000037 ! weighing of grain per plot
relationship: scale_of CO_336:0000040 ! weighing of fodder per plot
[Term]
id: CO_336:0000039
name: fodder yield
namespace: SoybeanTrait
def: "Weight of harvested fodder i.e., haulm, stover per unit of area" []
synonym: "FODDERWT" EXACT []
synonym: "Haulm" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000040
name: weighing of fodder per plot
namespace: SoybeanMethod
def: "Measure the dry weight of stover, haulm harvested after threshing plants harvested from the plot excluing the borders." []
is_a: CO_336:Measurement ! Measurement
relationship: method_of CO_336:0000039 ! fodder yield
[Term]
id: CO_336:0000042
name: early shattering
namespace: SoybeanTrait
def: "Proportion of open pods at harvest" []
synonym: "Pods open" EXACT []
synonym: "SHATEARLY" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000043
name: early pod shattering estimation
namespace: SoybeanMethod
def: "Estimate the proportion of open pods at harvest by shattering the pods left on the 1m at both ends of the plot after the net yield plot was harvested" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000042 ! early shattering
relationship: method_of CO_336:0000248 ! pod shattering
[Term]
id: CO_336:0000044
name: 1 to 5 percentage scale
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000043 ! early pod shattering estimation
relationship: scale_of CO_336:0000043 ! early pod shattering estimation
[Term]
id: CO_336:0000044:1
name: 0% pods shattered
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000044 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000044:2
name: 1-10% pods shattered
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000044 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000044:3
name: 11-25% pods shattered
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000044 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000044:4
name: 26-50% pods shattered
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000044 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000044:5
name: >50% pods shattered
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000044 ! 1 to 5 percentage scale
[Term]
id: CO_336:0000045
name: storability
namespace: SoybeanTrait
def: "Capacity of a seed to emerge when planted after being stored during a given amount of time." []
synonym: "STORABILITY" EXACT []
synonym: "Storage" EXACT []
is_a: CO_336:Agronomical_traits ! Agronomical_traits
[Term]
id: CO_336:0000046
name: germination in storage count
namespace: SoybeanMethod
def: "Count the number of seedlings emerged after 8 months in storage out of 100 planted seeds" []
is_a: CO_336:Counting ! Counting
relationship: method_of CO_336:0000045 ! storability
[Term]
id: CO_336:0000047
name: Percentage
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000046 ! germination in storage count
relationship: scale_of CO_336:0000049 ! seed oil content measurement in the lab
relationship: scale_of CO_336:0000052 ! seed protein content measurement
relationship: scale_of CO_336:0000106 ! linoleic acid content measurement
relationship: scale_of CO_336:0000109 ! linolenic acid content measurement
relationship: scale_of CO_336:0000112 ! palmitic acid content measurement
relationship: scale_of CO_336:0000115 ! oleic acid content measurement
relationship: scale_of CO_336:0000118 ! methionine content calculation
relationship: scale_of CO_336:0000121 ! stearic acid content measurement
relationship: scale_of CO_336:0000148 ! lysine context extraction method
relationship: scale_of CO_336:0000154 ! isoflavone content measurement
relationship: scale_of CO_336:0000193 ! fiber content measurement
relationship: scale_of CO_336:0000196 ! moisture content measurement
[Term]
id: CO_336:0000048
name: seed oil content
namespace: SoybeanTrait
def: "Oil content of soybean seed" []
synonym: "%oil content, oil concentration" EXACT []
synonym: "OIL" EXACT []
is_a: CO_336:Biochemical_traits ! Biochemical_traits
[Term]
id: CO_336:0000049
name: seed oil content measurement in the lab
namespace: SoybeanMethod
def: "Weigh the amount of extracted oil from seed after harvest and divide by the seed dry weight" []
is_a: CO_336:Computation ! Computation
relationship: method_of CO_336:0000048 ! seed oil content
[Term]
id: CO_336:0000051
name: seed protein content
namespace: SoybeanTrait
def: "Protein content of seed" []
synonym: "%protein content, protein concentration" EXACT []
synonym: "PROTEIN" EXACT []
is_a: CO_336:Biochemical_traits ! Biochemical_traits
[Term]
id: CO_336:0000052
name: seed protein content measurement
namespace: SoybeanMethod
def: "After harvest, measure the protein content of the seed on a dry weight basis" []
is_a: CO_336:Computation ! Computation
relationship: method_of CO_336:0000051 ! seed protein content
[Term]
id: CO_336:0000054
name: reaction to aphis glycines
namespace: SoybeanTrait
def: "The reaction of the plant or plant part to damage caused by Aphis glycines feeding." []
synonym: "APHID" EXACT []
synonym: "Soybean aphid" EXACT []
is_a: CO_336:Biotic_stress_traits ! Biotic_stress_traits
[Term]
id: CO_336:0000055
name: aphid attack assessment
namespace: SoybeanMethod
def: "Observe the plant parts that are yellowing and/or curling" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000054 ! reaction to aphis glycines
[Term]
id: CO_336:0000056
name: Undefined scale
namespace: SoybeanScale
is_a: CO_336:Undefined ! Undefined
relationship: scale_of CO_336:0000055 ! aphid attack assessment
relationship: scale_of CO_336:0000073 ! flooding reaction of plants assessment
relationship: scale_of CO_336:0000079 ! drought reaction of plants observation
relationship: scale_of CO_336:0000082 ! herbicide reaction of plant assessment
relationship: scale_of CO_336:0000100 ! cold reaction assessment
relationship: scale_of CO_336:0000103 ! hot reaction assessment
relationship: scale_of CO_336:0000181 ! primary root shape observation
relationship: scale_of CO_336:0000184 ! primary root thickness measure
relationship: scale_of CO_336:0000190 ! average stem diameter
relationship: scale_of CO_336:0000202 ! downy mildew assessment method
relationship: scale_of CO_336:0000208 ! lateral root thickness measure
relationship: scale_of CO_336:0000214 ! starchyose measurement
[Term]
id: CO_336:0000057
name: plant branching
namespace: SoybeanTrait
def: "Tendency of plant to form primary branches" []
synonym: "BRANCHING" EXACT []
synonym: "Branching" EXACT []
is_a: CO_336:Morphological_traits ! Morphological_traits
[Term]
id: CO_336:0000058
name: plant branching observation
namespace: SoybeanMethod
def: "At maturity, observe the abundance of primary branches" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000057 ! plant branching
[Term]
id: CO_336:0000059
name: 1 to 5 branching scale
namespace: SoybeanScale
is_a: CO_336:Ordinal ! Ordinal
relationship: scale_of CO_336:0000058 ! plant branching observation
[Term]
id: CO_336:0000059:1
name: rarely branching
namespace: SoybeanScale
synonym: "1" EXACT []
is_a: CO_336:0000059 ! 1 to 5 branching scale
[Term]
id: CO_336:0000059:2
name: fair branching
namespace: SoybeanScale
synonym: "2" EXACT []
is_a: CO_336:0000059 ! 1 to 5 branching scale
[Term]
id: CO_336:0000059:3
name: moderatly branching
namespace: SoybeanScale
synonym: "3" EXACT []
is_a: CO_336:0000059 ! 1 to 5 branching scale
[Term]
id: CO_336:0000059:4
name: mostly branching
namespace: SoybeanScale
synonym: "4" EXACT []
is_a: CO_336:0000059 ! 1 to 5 branching scale
[Term]
id: CO_336:0000059:5
name: profusely branching
namespace: SoybeanScale
synonym: "5" EXACT []
is_a: CO_336:0000059 ! 1 to 5 branching scale
[Term]
id: CO_336:0000060
name: reproductive period
namespace: SoybeanTrait
def: "Time between the beginning of flowering (R1) and full maturity (R8)" []
synonym: "REPROD" EXACT []
synonym: "Reproductive stage length" EXACT []
is_a: CO_336:Phenological_traits ! Phenological_traits
[Term]
id: CO_336:0000061
name: reproductive period duration measurement
namespace: SoybeanMethod
def: "Count number of days from beginning of bloom (R1) to full maturity(R8)" []
is_a: CO_336:Counting ! Counting
relationship: method_of CO_336:0000060 ! reproductive period
[Term]
id: CO_336:0000063
name: flower color
namespace: SoybeanTrait
def: "Color of the flower petals" []
synonym: "FLWRCOLOR" EXACT []
is_a: CO_336:Morphological_traits ! Morphological_traits
[Term]
id: CO_336:0000064
name: flower color observation
namespace: SoybeanMethod
def: "At flowering, observe the color of flower" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000063 ! flower color
[Term]
id: CO_336:0000065
name: 1 to 9 color scale
namespace: SoybeanScale
is_a: CO_336:Nominal ! Nominal
relationship: scale_of CO_336:0000064 ! flower color observation
[Term]
id: CO_336:0000065:1
name: blue
namespace: SoybeanScale
synonym: "1" EXACT []
synonym: "B" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:2
name: dark purple
namespace: SoybeanScale
synonym: "2" EXACT []
synonym: "Dp" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:3
name: light purple
namespace: SoybeanScale
synonym: "3" EXACT []
synonym: "Lp" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:4
name: magenta
namespace: SoybeanScale
synonym: "4" EXACT []
synonym: "M" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:5
name: near white
namespace: SoybeanScale
synonym: "5" EXACT []
synonym: "Nw" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:6
name: white
namespace: SoybeanScale
synonym: "6" EXACT []
synonym: "W" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:7
name: purple
namespace: SoybeanScale
synonym: "7" EXACT []
synonym: "P" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:8
name: purple mutable
namespace: SoybeanScale
synonym: "8" EXACT []
synonym: "Pm" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000065:9
name: dilute purple
namespace: SoybeanScale
synonym: "9" EXACT []
synonym: "Pth" EXACT []
is_a: CO_336:0000065 ! 1 to 9 color scale
[Term]
id: CO_336:0000066
name: pod length
namespace: SoybeanTrait
def: "Length of the pod from the calyx to the pod tip in cm or mm" []
synonym: "Fruit length" EXACT []
synonym: "PODLENGTH" EXACT []
is_a: CO_336:Morphological_traits ! Morphological_traits
[Term]
id: CO_336:0000067
name: measure length of pod
namespace: SoybeanMethod
def: "Measure length of pod from caylx to pod tip using a length measuring instrument" []
is_a: CO_336:Measurement ! Measurement
relationship: method_of CO_336:0000066 ! pod length
[Term]
id: CO_336:0000068
name: mm
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000067 ! measure length of pod
[Term]
id: CO_336:0000069
name: twining date
namespace: SoybeanTrait
def: "Time when soybean twines" []
synonym: "TWINNING" EXACT []
is_a: CO_336:Phenological_traits ! Phenological_traits
[Term]
id: CO_336:0000070
name: twinning date observation
namespace: SoybeanMethod
def: "Take note of the date when 50% of plants are twining" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000069 ! twining date
[Term]
id: CO_336:0000071
name: mmdd
namespace: SoybeanScale
is_a: CO_336:Date ! Date
relationship: scale_of CO_336:0000070 ! twinning date observation
[Term]
id: CO_336:0000072
name: flooding tolerance
namespace: SoybeanTrait
def: "Response of plant to inundation by water of all or part of the plant" []
synonym: "FLOODING" EXACT []
synonym: "Submergence tolerance, waterlogging response" EXACT []
is_a: CO_336:Abiotic_stress_traits ! Abiotic_stress_traits
[Term]
id: CO_336:0000073
name: flooding reaction of plants assessment
namespace: SoybeanMethod
def: "Appearance of plants in response to flooding" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000072 ! flooding tolerance
[Term]
id: CO_336:0000075
name: chlorosis
namespace: SoybeanTrait
def: "Reduction in chlorophyll in a plant or plant part as a result of nutrient deficiency" []
synonym: "CHLOROSIS" EXACT []
synonym: "Yellowing" EXACT []
is_a: CO_336:Abiotic_stress_traits ! Abiotic_stress_traits
[Term]
id: CO_336:0000076
name: chlorophyll content measurement
namespace: SoybeanMethod
def: "Measurement chlorophyll content using a SPAD meter and then compare to a reference" []
is_a: CO_336:Estimation ! Estimation
relationship: method_of CO_336:0000075 ! chlorosis
[Term]
id: CO_336:0000077
name: SPAD unit
namespace: SoybeanScale
is_a: CO_336:Numerical ! Numerical
relationship: scale_of CO_336:0000076 ! chlorophyll content measurement
relationship: scale_of CO_336:0000151 ! chlorophyll content measurement
[Term]