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How to pretrain MolFM ? #73

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Syzseisus opened this issue Oct 18, 2024 · 0 comments
Open

How to pretrain MolFM ? #73

Syzseisus opened this issue Oct 18, 2024 · 0 comments

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@Syzseisus
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Syzseisus commented Oct 18, 2024

Hi, Thanks you for your great work!

Where can I find the pretrain code that includes "Structure-Text Contrastive loss," "Cross-Modal Matching loss," "Masked Language Modeling loss," and "Knowledge graph embedding loss," as in figure 1 and section 3.2 Pre-training objectives of the MolFm paper?
In other words, how can I reproduce the ckpt file?

In addition, that ckpt file is uploaded on Baidu, so it is difficult to download it. Can you provide the file through another channel?

Sincerely, Syzseisus

p.s. (to author of paper) Why did you use the knowledge graph only in the molecule property prediction task and not in the rest of the 4 downstream tasks mentioned in the paper?

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