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ckpts json files not available #66

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emontal opened this issue May 15, 2024 · 5 comments
Open

ckpts json files not available #66

emontal opened this issue May 15, 2024 · 5 comments

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@emontal
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emontal commented May 15, 2024

I am trying to run your example (biomedgpt_inference.ipynb) and the OpenBioMed/ckpts/protein_ckpts/esm2-3b/config.json file is not found. Actually, there are no json files in the ckpts folder. Are theu going to be uploaded or they somewhere I have not notice? Thank you in advanced

@icycookies
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Thanks for your attention in our work! Please refer to this link and this link to download the JSON files of model architecture.

@emontal
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emontal commented May 21, 2024

But the files I am looking for are not there.

@icycookies
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Downloading config.json from https://huggingface.co/facebook/esm2_t36_3B_UR50D/tree/main and put it under OpenBioMed/ckpts/protein_ckpts/esm2-3b/ shall fix the problem.

@emontal
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emontal commented May 29, 2024

These files are missing as well: ./ckpts/text_ckpts/biomedgpt-lm-7b

@icycookies
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The checkpoints and configs can be downloaded from huggingface.

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