system_setup.Rmd

---
title: "System Setup"
output: html_notebook
---

> This script has been tested on Ubuntu 17.10 with passwordless sudo. It must be updated for other systems.

First we install the non-R dependencies:

```{bash}
sudo apt-get install tcsh
```

Then install the required R packages to analyze the data:

```{r}
install.packages(c(
    "car",
    "data.table",
    "assertthat",
    "fst",
    "stringr",
    "plyr",
    "ggplot2",
    "ggrepel",
    "scales",
    "xtable",
    "MASS",
    "gplots",
    "dplyr",
    "gridExtra",
    "grid",
    "tidyr"
))

```