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mkdocs.yml
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mkdocs.yml
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# Project Information
site_name: genome-seek
site_author: Skyler Kuhn
site_description: >-
Clinical whole genome sequencing pipeline
# Repository
repo_name: OpenOmics/genome-seek
repo_url: https://github.com/OpenOmics/genome-seek
edit_uri: https://github.com/OpenOmics/genome-seek/edit/main/docs/
# Extra
extra_css:
- css/extra.css
# Copyright
copyright: Copyright © 2023 OpenOmics
# Configuration
theme:
name: material
features:
- navigation.tabs
- navigation.top
- toc.integrate
palette:
# Palette toggle for light mode
- scheme: default
toggle:
icon: material/lightbulb-on
name: Switch to dark mode
# Palette toggle for dark mode
- scheme: slate
toggle:
icon: material/weather-night
name: Switch to light mode
logo: assets/icons/doc-book.svg
favicon: assets/favicon/favicon.ico
# Plugins
plugins:
- search
- git-revision-date
- minify:
minify_html: true
# Customization
extra:
social:
- icon: fontawesome/solid/users
link: https://ncbr.ncifcrf.gov/
- icon: fontawesome/brands/github
link: https://github.com/OpenOmics
- icon: fontawesome/brands/docker
link: https://hub.docker.com/u/skchronicles
version:
provider: mike
# Extensions
markdown_extensions:
- markdown.extensions.md_in_html
- markdown.extensions.admonition
- markdown.extensions.attr_list
- markdown.extensions.def_list
- markdown.extensions.footnotes
- markdown.extensions.meta
- markdown.extensions.toc:
permalink: true
- pymdownx.arithmatex:
generic: true
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
- pymdownx.highlight
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink:
repo_url_shorthand: true
user: squidfunk
repo: mkdocs-material
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.snippets:
check_paths: true
- pymdownx.superfences
- pymdownx.tabbed:
alternate_style: true
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
# Page Tree
nav:
- About: index.md
- Commands:
- genome-seek run: usage/run.md
- genome-seek unlock: usage/unlock.md
- genome-seek install: usage/install.md
- genome-seek cache: usage/cache.md
- FAQ:
- General Questions: faq/questions.md
- License: license.md