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Source code for article titled: Computing Marine Plankton Connectivity under Thermal Constraints

We used Ocean Parcels to run the simulations with high resolution model data provided by CMCC. The code used for this study is organized in folder structures.

data/: Data files for sample stations in the Atlantic Ocean and thermal constraints settings used in this study.

Programs

Code for the analysis can be used in the following order-

  1. processing/AtlanticReleaseLocationsH3.ipynb : To create the set of release locations and mapping of particles to H3 grids HexId.
  2. simulations/Atlantic_TSSampling_Args.py
  3. processing/MonthlySparseTM.py and then processing/AnnualAverageTM.py: to compute binary connectivity and temperature matrices from simulation outputs.
  4. analysis/AllStationsConnectivities.py: compute connectivity between stations for non-constrained and thermally constrained scenarios Bootstrap
  5. processin/Bootstrap_MonthlyTM.py, processing/Bootstrap_Annual_TM.py and analysis\BootParticleEnsembles.py for the bootstrapping analysis.
Figures

Plots in the manuscript have been generated using the following codes:

  • Figure 1: visualizations/PlotAtlanticStations.py
  • Figure 2A: visualizations/ReleasePointsGridding.py
  • Figure 4A: visualizations/PlotAllStationConnectivities.py
  • Figure 4B, G-J and 7C-D: visualizations/StationsPairConnectivity.py
  • Figure 4C-F, 7A-B: visualizations/PairFractionalChange.py
  • Figure 5: visualizations/TimeMeanVariables.ipynb
  • Figure 6: visualizations/BootParticleSensitivity.py
  • Figure 8, 9: visualizations/PlotFractionalChange.py