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ci.yml
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name: ci
on:
push:
branches:
- "master"
- "test-me/*"
pull_request:
schedule:
- cron: "0 7 * * 1" # Run every Monday at 7:00 UTC
concurrency:
group: branch-${{ github.head_ref }}
cancel-in-progress: true
defaults:
run:
shell: bash -el {0}
jobs:
unit-test:
name: "py${{ matrix.python-version }} | ${{ matrix.os }} | unit tests"
runs-on: ${{ matrix.os }}-latest
strategy:
fail-fast: false
matrix:
os: [macos, ubuntu, windows]
python-version: ["3.12"]
include:
- os: ubuntu
python-version: "3.10"
- os: ubuntu
python-version: "3.11"
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Setup Conda and parcels
uses: ./.github/actions/install-parcels
with:
environment-file: environment.yml
python-version: ${{ matrix.python-version }}
- name: Unit test
run: |
coverage run -m pytest -v -s --html=${{ matrix.os }}_${{ matrix.python-version }}_unit_test_report.html --self-contained-html tests
coverage xml
- name: Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
flags: unit-tests
- name: Upload test results
if: ${{ always() }} # Always run this step, even if tests fail
uses: actions/[email protected]
with:
name: Unittest report
path: ${{ matrix.os }}_${{ matrix.python-version }}_unit_test_report.html
integration-test:
name: "py${{ matrix.python-version }} | ${{ matrix.os }} | integration tests"
runs-on: ${{ matrix.os }}-latest
strategy:
fail-fast: false
matrix:
os: [macos, ubuntu, windows]
python-version: ["3.12"]
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Setup Conda and parcels
uses: ./.github/actions/install-parcels
with:
environment-file: environment.yml
- name: Integration test
run: |
coverage run -m pytest -v -s --nbval-lax -k "not documentation" --html="${{ matrix.os }}_integration_test_report.html" --self-contained-html docs/examples
coverage xml
- name: Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
flags: integration-tests
- name: Upload test results
if: ${{ always() }} # Always run this step, even if tests fail
uses: actions/[email protected]
with:
name: Integration test report
path: ${{ matrix.os }}_integration_test_report.html
typechecking:
name: mypy
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Setup Conda and parcels
uses: ./.github/actions/install-parcels
with:
environment-file: environment.yml
- run: conda install lxml # dep for report generation
- name: Typechecking
run: |
mypy --install-types --non-interactive parcels --cobertura-xml-report mypy_report
- name: Upload mypy coverage to Codecov
uses: codecov/[email protected]
if: ${{ always() }} # Upload even on error of mypy
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: mypy_report/cobertura.xml
flags: mypy
fail_ci_if_error: false