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pwma_va_demo.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta http-equiv="Cache-Control" content="no-cache, no-store, must-revalidate" />
<meta http-equiv="Pragma" content="no-cache" />
<meta http-equiv="Expires" content="0" />
<title>Pairwise Meta-Analysis Plots</title>
<link rel="shortcut icon" href="./favicon.ico">
<!-- <script src="https://kit.fontawesome.com/cb45cc91b0.js" crossorigin="anonymous"></script> -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.3/css/all.min.css" integrity="sha512-iBBXm8fW90+nuLcSKlbmrPcLa0OT92xO1BIsZ+ywDWZCvqsWgccV3gFoRBv0z+8dLJgyAHIhR35VZc2oM/gI1w==" crossorigin="anonymous" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.css" />
<style>
/**
* My Box Style
* This style is for showing more items on one page.
*/
.d-flex {
display: flex;
}
.fx-row {
flex-direction: row;
}
.fx-col {
flex-direction: column;
}
.fx-jc-space-between {
justify-content: space-between;
}
/* box */
.box {
display: flex;
flex-direction: column;
width: 100%;
font-size: 12px;
font-family: Arial, Helvetica, sans-serif;
}
.box-header {
width: 100%;
padding: 3px 0;
display: flex;
flex-direction: row;
}
.box-header-grey {
background-color: #efefef;
}
.box-header a {
font-size: .8em;
}
.box-header h4 {
padding: 0;
margin: 0;
font-size: .95em;
height: 1.6em;
line-height: 1.6em;
margin: 3px 0;
}
.box-header button,
.box-body button,
.box-footer button {
height: 1.6em;
line-height: 1em;
font-size: .8em;
margin: 4px;
}
.box-header input,
.box-body input {
height: 1em;
line-height: 1em;
font-size: 1em;
margin: 4px 4px 0 4px;
}
.box-input {
border: 0;
padding: 2px 3px;
border-bottom: 1px solid #333333;
}
.box-menu-group {
margin: 0 10px;
}
.box-menu-group div {
height: 1.6em;
line-height: 2em;
}
.box-menu-link {
text-decoration: underline;
cursor: pointer !important;
}
.box-menu-link:hover {
font-weight: bold;
}
.box-radio-group {
margin: 0 10px;
}
.box-radio-item {
padding: 0 5px;
display: flex;
align-items: center;
}
.box-radio-item:hover {
background-color: whitesmoke;
}
.box-radio-group div {
height: 1.6em;
line-height: 2em;
}
.box-radio-item label {
height: 1.6em;
}
.box-header select {
height: 1.6em;
line-height: 1.2em;
font-size: 1em;
margin: 0 4px;
}
.box-header p {
height: 1.6em;
line-height: 1.2em;
font-size: 1em;
margin: 5px 0 0 2px;
}
.box-header span {
font-size: .9em;
}
.box-header-right {
font-size: .95em;
height: 1.6em;
line-height: 1.6em;
margin: 3px 0;
text-align: right;
}
.box-header a {
padding: 1px 3px;
margin: 0 5px;
height: 1.6em;
line-height: 1.6em;
}
.box-header a:hover {
text-decoration: underline;
}
.box-body {
width: 100%;
}
.box-body-item {
padding: 5px 0 5px 0;
display: flex;
flex-direction: column;
border-bottom: 1px dotted #cccccc;
}
/* for left - right items */
.box-body-item-left {
width: 73%;
}
.box-body-item-right {
width: 24%;
display: flex;
flex-direction: row;
}
.box-body-item-label {
width: 54%;
font-size: .9em;
line-height: 1.8em;
}
.box-body-item-value {
width: 45%;
}
.box-body-item select {
width: calc(100% - 10px);
font-size: 1em;
padding: 2px 0;
}
/* the label values items */
.bbi-label {
width: 100%;
padding: 0 0 3px 0;
font-size: .8em;
color: #666666;
/* just for using the question marks */
justify-content: space-between;
}
.bbi-value {
width: calc(100% - 10px);
padding: 2px 0px 2px 10px;
font-size: .9em;
color: #000000;
}
.bbi-label-hint {
color: #999999;
cursor: help;
}
.bbi-label-hint:hover {
color: #333333;
}
.box-body h5 {
padding: 0;
margin: 0;
font-size: 1em;
height: 1.6em;
line-height: 1.6em;
margin: 3px 0;
}
.box-p {
width: 100%;
padding: 0;
margin: 0;
font-size: .9em;
}
.box-p-fixlen {
white-space: nowrap;
text-overflow:ellipsis;
overflow: hidden;
}
.box-footer {
width: 100%;
min-height: 20px;
padding: 5px 0 5px 0;
}
/* font sizes */
.txt-sm {
font-size: 0.9em;
}
.txt-nm {
font-size: 1em;
}
.txt-lg {
font-size: 1.3em;
}
.txt-xl {
font-size: 1.6em;
}
/* font bold */
.txt-fb {
font-weight: bold;
}
.box-header h4 {
margin: 2px 0;
}
.select-sm {
width: 80px;
}
html, body {
width: 100%;
height: 100%;
padding: 0;
margin: 0;
overflow: hidden;
}
body {
font-size: 12px;
font-family: Arial, Helvetica, sans-serif;
}
a {
color: #333333;
text-decoration: none;
}
#wrapper {
display: flex;
flex-direction: column;
width: 100%;
height: 100%;
}
#start-screen {
width: 100%;
height: 100%;
z-index: 9999;
background: white;
display: flex;
flex-direction: column;
justify-content: center;
align-items: center;
}
#ss-msg {
width: 100%;
padding: 10px 0;
text-align: center;
}
/* for this page */
#app {
width: 100%;
height: calc(100% - 42px);
}
#app_oclist {
width: 320px;
padding: 0 5px;
height: calc(100% - 15px);
/* height: 810px; */
/* background-color: whitesmoke; */
}
#app_oclist_aespanel {
width: 100%;
height: 100%;
overflow-x: hidden;
overflow-y: auto;
}
#vw_ocplots_mainpanel {
width: calc(100% - 320px);
padding: 0 5px;
height: 100%;
}
#vw_ocplots_plotpanel {
height: 100%;
overflow-y: hidden;
}
.oc-group {
cursor: pointer;
padding: 3px 0;
text-align: left;
/* text-transform: uppercase; */
background-color: #f3f3f3;
border-top: 1px solid #cccccc;
}
.oc-name {
width: 200px;
min-width: 200px;
cursor: pointer;
padding: 2px 0;
}
.oc-type {
width: 30px;
min-width: 30px;
text-align: center;
cursor: pointer;
padding: 2px 0;
}
.oc-type:hover {
background-color: #cccccc;
font-weight: bold;
}
.oc-type-selected {
background-color: #555555;
color: #ffffff;
font-weight: bold;
}
.oc-cate {
flex-direction: column;
}
.oc-cate-info {
width: 100%;
/* border-top: 1px solid #dddddd; */
padding: 2px 0;
border-bottom: 1px solid transparent;
}
.oc-cate-info:hover {
border-bottom: 1px solid #555555;
}
.oc-cate-info .oc-name {
font-weight: bold;
}
.oc-cate-info .oc-type {
font-weight: bold;
}
.oc-items {
width: 100%;
padding-left: 20px;
}
.oc-items-hide {
display: none;
}
.oc-item {
width: 100%;
border-left: 1px solid #aaaaaa;
}
.oc-item-info {
width: calc(100% - 20px);
border-bottom: 1px solid transparent;
}
.oc-item-info:hover {
background-color: #efefef;
border-bottom: 1px solid #cccccc;
}
.oc-item-info .oc-name {
width: 170px;
min-width: 170px;
padding-left: 10px;
}
.oc-plot-img {
width: 100%;
}
.oc-plot-tab {
padding: 4px 15px;
border: 0;
color: #999999;
border-bottom: 1px solid #999999;
cursor: pointer;
}
.oc-plot-tab:hover {
color: #555555;
border-bottom: 1px solid #555555;
}
.oc-plot-tab-selected {
color: #000000;
font-weight: bold;
border-bottom: 1px solid #000000;
}
.oc-plot-tab-page {
display: none;
padding: 10px 10px 0 15px;
overflow-y: auto;
}
.oc-plot-tab-page-selected {
display: block;
overflow-y: auto;
}
.sfilter {
margin-right: 15px;
}
.sfilter-name {
font-size: 1.1em;
padding: 2px 0;
}
.sfilter-select {
width: 100%;
}
#app_filter {
padding: 5px 0 0 5px;
}
#fig_scatter {
width: 500px;
height: 500px;
}
#fig_sunburst {
width: 600px;
height: 600px;
}
.fig-tooltip-header {
border-bottom: 1px solid rgba(255,255,255,.3);
font-size: 1.2em;
padding-bottom: 7px;
margin-bottom: 7px;
}
.d-flex {
display: flex;
}
.flex-row {
flex-direction: row;
}
.flex-wrap {
flex-wrap: wrap;
}
.flex-col {
flex-direction: column;
}
.flex-align-items-baseline {
align-items: baseline;
}
.flex-align-items-center {
align-items: center;
}
#plot_nav {
/* margin-top: -15px; */
display: flex;
flex-direction: row;
}
.plot-nav {
padding: 3px 10px;
color: #777777;
border-bottom: 1px solid #333;
}
.plot-nav-active {
border: 1px solid #333;
color: #000000 !important;
border-bottom: 0 !important;
font-weight: bold;
}
#plot_main {
padding: 5px;
/* border-bottom: 1px solid #dfdfdf; */
}
#fig_sunburst {
}
#fig_sunburst_legend {
position: relative;
z-index: 10;
}
#fig_sunburst_legend img {
position: absolute;
top: 5px;
left: 5px;
width: 160px;
}
.fig-legend {
opacity: 0.5;
}
.fig-legend:hover {
opacity: 1;
}
.fh-g {
}
.fh-g-name {
}
.fh-c {
padding: 2px;
margin: 2px;
/* border-right: 1px dotted #efefef; */
/* border-bottom: 1px dotted #efefef; */
border: 1px dotted #efefef;
}
.fh-c-5 {
width: 90px;
}
.fh-c-8 {
width: 145px;
}
.fh-c-10 {
width: 190px;
}
.fh-c:hover {
border-color: #777777;
}
.fh-c-name {
font-size: 0.85em;
padding: 1px 0;
margin: 0 0 2px 0;
}
.fh-o {
width: 10px;
height: 10px;
padding: 2px;
margin: 1px;
white-space: nowrap;
text-overflow: clip;
overflow: hidden;
font-size: 0.7em;
color: #999999;
border: 1px solid #efefef;
}
.fh-o:hover {
border-color: #777777;
}
#app_comptb {
min-height: 800px;
height: 99%;
min-width: 1000px;
padding: 0 5px;
}
.cmp-tb {
}
.cmp-tb-row {
display: flex;
flex-direction: row;
}
.cmp-tb-row:hover{
background-color: whitesmoke;
}
.cmp-tb-row-header {
position: sticky;
top: 0;
background-color: white;
z-index: 99;
}
.cmp-tb-cell {
width: 50px;
min-width: 50px;
height: 24px;
min-height: 24px;
display: flex;
justify-content: center;
/* align-self: center; <---- REMOVE */
align-items: center; /* <---- NEW */
padding: 3px 0;
border-bottom: 1px solid #dfdfdf;
}
.cmp-tb-cell-header {
font-weight: bold;
border-bottom: 1px solid #777777;
padding: 4px 0;
}
.cmp-tb-cell-header-sortable {
cursor: pointer;
}
.cmp-tb-cell-footer {
font-weight: bold;
/* border-top: 1px solid #777777; */
padding: 4px 0;
}
.cmp-tb-cell-xs {
width: 20px !important;
min-width: 20px !important;
}
.cmp-tb-cell-sm {
width: 50px !important;
min-width: 50px !important;
}
.cmp-tb-cell-ocname {
width: 160px !important;
min-width: 160px !important;
}
.cmp-tb-cell-ocname-item {
cursor: pointer;
}
.cmp-tb-cell-smtxt {
font-size: 0.95em;
list-style: 0.8em;
}
.cmp-tb-cell-sep {
width: 45px !important;
min-width: 45px !important;
}
.cmp-tb-cell-category {
width: 120px !important;
min-width: 120px !important;
}
.cmp-tb-cell-treatment {
width: 140px !important;
min-width: 140px !important;
}
.cmp-tb-cell-effect-lg {
min-width: 360px !important;
width: 360px !important;
/* display: block !important; */
position: relative;
text-align: center;
}
.cmp-tb-cell-effect {
min-width: 120px !important;
width: 120px !important;
/* display: block !important; */
position: relative;
text-align: center;
}
.cmp-tb-cell-eft {
display: block !important;
text-align: center;
}
.cmp-filters {
width: 100%;
font-style: italic;
font-size: .85em;
}
.cmp-occate {
width: 100%;
white-space: nowrap;
text-overflow: ellipsis;
overflow: hidden;
}
.cmp-ocname {
width: 100%;
white-space: nowrap;
text-overflow: clip;
overflow: hidden;
}
.cmp-eft-ci-line {
height: 1px;
position: absolute;
top: 14px;
border-bottom: 1px solid #333333;
}
.cmp-eft-dot {
width: 7px;
height: 7px;
top: 12px;
position: absolute;
/* opacity: 0.8; */
}
.cmp-eft-value {
font-size: .8em;
color: #555555;
margin-top: 0.5em;
/* margin-left: 1em; */
/* position: absolute; */
/* left: 0; */
width: 88px;
}
.cmp-tb-cell-effect .cmp-ref-one {
position: absolute;
left: 59px;
top: 0;
height: 100%;
border-right: 1px dotted #aaaaaa;
}
.cmp-tb-cell-effect-lg .cmp-ref-one {
position: absolute;
left: 179px;
top: 0;
height: 100%;
border-right: 1px dotted #aaaaaa;
}
.cmp-ref-50 {
position: absolute;
left: 60px;
top: 0;
height: 100%;
border-right: 1px dotted #aaaaaa;
}
.btn {
padding: 3px 5px;
text-decoration: none !important;
}
.btn:hover {
background-color: #cacaca;
}
.btn-remove {
color: #ffdcdc;
}
.btn-remove:hover {
color: white;
background-color: rgb(255, 70, 70);
}
.btn-add-ocs {
color: #888888;
}
.btn-add-ocs:hover {
color: #333333;
background-color: #cccccc;
}
#app_sclist {
width: 600px;
}
.sc-item-panel {
margin-top: 5px;
height: 150px;
overflow-x: hidden;
overflow-y: auto;
}
.sc-item-box {
position: relative;
}
.sc-item {
margin: 5px 5px 0 0;
padding: 1px;
height: 130px;
border-bottom: 1px solid #efefef;
}
.sc-item:hover {
cursor: pointer;
background-color: whitesmoke;
}
.sc-img {
height: 110px;
}
.sc-close {
position: absolute;
top: 0;
right: 0;
}
.sc-info {
width: 100%;
text-align: center;
font-size: .8em;
font-style: italic;
white-space: nowrap;
text-overflow: clip;
overflow: hidden;
}
.forest-plot-panel {
height: 100%;
overflow-y: auto;
}
.hide {
display: none;
}
.badge {
padding: 1px 4px;
background-color: #eeeeee;
border-radius: 4px;
}
.badge-t,
.badge-treatment {
background-color: #EBF8FF;
}
.badge-i,
.badge-immune {
background-color: #F4EBFF;
}
.ml-1 {
margin-left: 1em;
}
.ml-2 {
margin-left: 2em;
}
.ml-3 {
margin-left: 3em;
}
.mr-1 {
margin-right: 1em;
}
.mr-2 {
margin-right: 2em;
}
.mr-3 {
margin-right: 3em;
}
</style>
</head>
<body>
<div id="start-screen">
<h1>
<i class="fa fa-chart-bar"></i>
Real-time Visual Analysis of Pairwise Meta-Analysis Results
</h1>
<div id="ss-msg">Loading data and initializing ...</div>
</div>
<div id="wrapper">
<div id="app_filter" class="d-flex flex-row">
<div v-for="dropdown, dpd_idx in dropdowns"
class="sfilter d-flex fx-col mr-3">
<div class="sfilter-name">
{{ dropdown.display_name }}
</div>
<div>
<select class="sfilter-select"
v-bind:value="dropdown.value"
v-bind:disabled="is_filter_disabled(dpd_idx)"
v-on:change="on_filter_value_change($event, dpd_idx)">
<option v-for="opt in dropdown.options"
v-bind:value="opt.value">
{{ opt.name }}
</option>
</select>
</div>
</div>
<div class="d-flex fx-col mr-3">
<div class="sfilter-name">
Number of studies
</div>
<div style="height: 20px; line-height: 20px;">
{{ n_papers }}
</div>
</div>
</div>
<div id="app" class="d-flex flex-row">
<div id="app_oclist">
<div class="box" style="height: 100%;">
<div class="box-header">
<h4>
<i class="fa fa-search"></i>
Outcome List |
</h4>
<!-- <div>
<input type="text" class="box-input" style="background-color: transparent;">
</div> -->
<div class="d-flex flex-align-items-center">
<!-- <a class="btn"
href="javascript:void(0);"
v-on:click="toggle_all_cates(false)">
<i class="fa fa-expand-alt"></i>
Expand
</a>
<a class="btn"
href="javascript:void(0);"
v-on:click="toggle_all_cates(true)">
<i class="fa fa-compress-alt"></i>
Collapse
</a> -->
<select v-model="color_mode_by_sm"
class="select-sm">
<option value="RR">RR: Color by Risk Ratio</option>
<option value="OR">OR: Color by Odds Ratio</option>
</select>
<select v-model="cnt_rule"
class="select-sm">
<optgroup label="Simple Threshold">
<option value="ge1">All outcomes with at lease 1 study</option>
<option value="ge5">Equal or greater than 5 studies</option>
<option value="ge10">Equal or greater than 10 studies</option>
<option value="ge20">Equal or greater than 20 studies</option>
</optgroup>
<optgroup label="Complex Rules">
<option value="ge1s5">At lease 1 study but less than 5</option>
<option value="ge5ls10">Equal or greater than 5 but less than 10</option>
<option value="ge10ls20">Equal or greater than 10 but less than 20</option>
</optgroup>
</select>
<div id="show_overview" style="display: none;">
<a href="javascript:void(0);"
title="Show Overview"
onclick="jarvis.set_mode(0)"
class="btn">
<i class="fas fa-plus-circle"></i>
</a>
</div>
</div>
</div>
<div class="box-body" style="height: calc(100% - 70px);">
<div class="d-flex fx-col">
<div class="d-flex flex-row ">
<div class="oc-name" style="font-weight: bold;">
<div class="d-flex flex-row flex-align-items-baseline">
<span>
Search:
</span>
<input type="text" v-model="keyword"
style="width: 80px;">
<a v-on:click="keyword = ''"
class="btn btn-remove"
style="margin: 3px 0 0 -24px;"
href="javascript:void(0);">
<i class="fa fa-times"></i>
</a>
</div>
</div>
<div style="font-weight: bold; width: 90px; text-align: center; border-bottom: 1px solid #555555;">
Grade
</div>
</div>
</div>
<div class="oc-cate d-flex fx-col">
<div class="oc-cate-info d-flex flex-row">
<div class="oc-name" style="font-weight: bold;">
{{ n_all() }}
Outcomes
</div>
<div class="oc-type" title="All Grades">
ALL
</div>
<div class="oc-type" title="Grade 3 or Higher">
3+
</div>
<div class="oc-type" title="Grade 5 Only">
5
</div>
</div>
</div>
<div id="app_oclist_aespanel">
<div class="oc-cate d-flex fx-col"
v-for="group in rs">
<div class="oc-group d-flex flex-row">
<div class="oc-name"
v-on:click="toggle_group(group.oc_group)">
<i class="far fa-folder" v-if="group.is_close"></i>
<i class="far fa-folder-open" v-else></i>
{{ group.oc_group }} related AEs
({{ n_group(group) }})
</div>
<div v-on:click="add_group(group, 'GA')"
class="oc-type">
<a :title="'Add [' + group.oc_group + '] GA outcomes'"
class="btn-add-ocs"
href="javascript:void(0);">
<i class="fa fa-plus"></i>
</a>
</div>
<div v-on:click="add_group(group, 'G3H')"
class="oc-type">
<a :title="'Add [' + group.oc_group + '] G3+ outcomes'"
class="btn-add-ocs"
href="javascript:void(0);">
<i class="fa fa-plus"></i>
</a>
</div>
<div v-on:click="add_group(group, 'G5N')"
class="oc-type">
<a :title="'Add [' + group.oc_group + '] G5 outcomes'"
class="btn-add-ocs"
href="javascript:void(0);">
<i class="fa fa-plus"></i>
</a>
</div>
</div>
<div v-for="r in group.cates"
v-bind:class="{hide: group.is_close}"
v-show="match_keyword_in_cate(r)">
<div class="oc-cate-info d-flex flex-row">
<div v-on:click="toggle_cate(group.oc_group, r.oc_cate)"
class="oc-name">
<i class="far fa-folder" v-if="r.is_close"></i>
<i class="far fa-folder-open" v-else></i>
<span class="badge"
:class="'badge-' + group.oc_group">
{{ group.oc_group[0] }}
</span>
{{ r.oc_cate }}
({{ n_cate(r) }})
</div>
<div v-on:click="add_cate(r, 'GA')"
class="oc-type">
<a :title="'Add [' + r.oc_cate + '] GA outcomes'"
class="btn-add-ocs"