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Describe the problem in content or desired feature
When the input for BuildRxE has multiple source data that represents the same ingredient + dose then the sum(prec)::INT4 AS new_prec in ri_combo_prex_fix and rd_combo_prex_fix increases the prec which sometimes makes it no longer find a mapping for ingredient + dose even though it does exist.
How to find it
input to reproduce the problem:
drug_concept_stage:
concept_name,domain_id,vocabulary_id,concept_class_id,concept_code
B01AE03_IV_1000.0_ug,Drug,2000000001,Drug Product,B01AE03_IV_1000.0_ug
B01AE03_IV_1.0_mg,Drug,2000000001,Drug Product,B01AE03_IV_1.0_mg
intravenous,Drug,2000000001,Dose Form,IV
argatroban; parenteral,Drug,2000000001,Ingredient,B01AE03
Expected adjustments
adjusting
SUM(prec)::INT4 AS new_prec
to
MIN(prec)::INT4 AS new_prec
in rd_combo_prex_fix (and ri_combo_prex_fix) fixes this.
Not sure if this might reintroduces the undeterminate query problem from #892 .
Screenshots
If applicable, add screenshots to help explain your problem.
Additional context
running BuildRxE.sql with sum(prec) gives no existing Clinical Drug Comp, running with min(prec) does give an existing Clinical Drug Comp mapping.
The text was updated successfully, but these errors were encountered:
Thank you for the input, @lore-edencehealth
It is impressive! We will get back to this issue after the release (we have not been running BuildRxE in this release)
Describe the problem in content or desired feature
When the input for BuildRxE has multiple source data that represents the same ingredient + dose then the sum(prec)::INT4 AS new_prec in ri_combo_prex_fix and rd_combo_prex_fix increases the prec which sometimes makes it no longer find a mapping for ingredient + dose even though it does exist.
How to find it
input to reproduce the problem:
drug_concept_stage:
concept_name,domain_id,vocabulary_id,concept_class_id,concept_code
B01AE03_IV_1000.0_ug,Drug,2000000001,Drug Product,B01AE03_IV_1000.0_ug
B01AE03_IV_1.0_mg,Drug,2000000001,Drug Product,B01AE03_IV_1.0_mg
intravenous,Drug,2000000001,Dose Form,IV
argatroban; parenteral,Drug,2000000001,Ingredient,B01AE03
relationship_to_concept:
concept_code_1,vocabulary_id,concept_id_2,precedence,conversion_factor
IV,2000000001,19082106,1,
IV,2000000001,19095915,2,
mg,2000000001,8576,,
ml,2000000001,8587,,
ug,2000000001,8576,,0.001
B01AE03,2000000001,1322207,,
internal_relationship_stage:
concept_code_1,concept_code_2
B01AE03_IV_1000.0_ug,B01AE03
B01AE03_IV_1000.0_ug,ug
B01AE03_IV_1000.0_ug,ml
B01AE03_IV_1000.0_ug,IV
B01AE03_IV_1.0_mg,B01AE03
B01AE03_IV_1.0_mg,mg
B01AE03_IV_1.0_mg,ml
B01AE03_IV_1.0_mg,IV
ds_stage:
drug_concept_code,ingredient_concept_code,amount_value,amount_unit,numerator_value,numerator_unit,denominator_value,denominator_unit
B01AE03_IV_1000.0_ug,B01AE03,,,1000,ug,1,ml
B01AE03_IV_1.0_mg,B01AE03,,,1,mg,1,ml
Expected adjustments
adjusting
SUM(prec)::INT4 AS new_prec
to
MIN(prec)::INT4 AS new_prec
in rd_combo_prex_fix (and ri_combo_prex_fix) fixes this.
Not sure if this might reintroduces the undeterminate query problem from #892 .
Screenshots
If applicable, add screenshots to help explain your problem.
Additional context
running BuildRxE.sql with sum(prec) gives no existing Clinical Drug Comp, running with min(prec) does give an existing Clinical Drug Comp mapping.
The text was updated successfully, but these errors were encountered: