From c8e7950a7e50b09e869b510a220117c8f480af3d Mon Sep 17 00:00:00 2001 From: egillax Date: Thu, 22 Feb 2024 12:37:32 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20OHDSI/De?= =?UTF-8?q?epPatientLevelPrediction@dcfc7fa4b930e3333d31e5345317278b5921bf?= =?UTF-8?q?47=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- dev/articles/BuildingDeepModels.html | 2 +- dev/articles/FirstModel.html | 2 +- dev/articles/Installing.html | 2 +- dev/authors.html | 4 +- dev/pkgdown.yml | 2 +- dev/reference/index.html | 12 ++ dev/reference/setFinetuner.html | 124 ++++++++++++++++++ dev/reference/snakeCaseToCamelCase.html | 126 +++++++++++++++++++ dev/reference/snakeCaseToCamelCaseNames.html | 126 +++++++++++++++++++ dev/sitemap.xml | 9 ++ 10 files changed, 403 insertions(+), 6 deletions(-) create mode 100644 dev/reference/setFinetuner.html create mode 100644 dev/reference/snakeCaseToCamelCase.html create mode 100644 dev/reference/snakeCaseToCamelCaseNames.html diff --git a/dev/articles/BuildingDeepModels.html b/dev/articles/BuildingDeepModels.html index e9a9a0e..ae1e4b8 100644 --- a/dev/articles/BuildingDeepModels.html +++ b/dev/articles/BuildingDeepModels.html @@ -105,7 +105,7 @@

Jenna Reps, Egill Fridgeirsson, Chungsoo Kim, Henrik John, Seng Chan You, Xiaoyong Pan

-

2023-12-23

+

2024-02-22

Source: vignettes/BuildingDeepModels.Rmd diff --git a/dev/articles/FirstModel.html b/dev/articles/FirstModel.html index f326c52..3d508a5 100644 --- a/dev/articles/FirstModel.html +++ b/dev/articles/FirstModel.html @@ -104,7 +104,7 @@

Developing your first DeepPLP model

Egill Fridgeirsson

-

2023-12-23

+

2024-02-22

Source: vignettes/FirstModel.Rmd diff --git a/dev/articles/Installing.html b/dev/articles/Installing.html index 3fd28c1..1d17ddf 100644 --- a/dev/articles/Installing.html +++ b/dev/articles/Installing.html @@ -105,7 +105,7 @@

DeepPatientLevelPrediction Installation

Egill Fridgeirsson

-

2023-12-23

+

2024-02-22

Source: vignettes/Installing.Rmd diff --git a/dev/authors.html b/dev/authors.html index b564235..0fa4009 100644 --- a/dev/authors.html +++ b/dev/authors.html @@ -108,14 +108,14 @@

Citation

-

Fridgeirsson E, Reps J, Chan You S, Kim C, John H (2023). +

Fridgeirsson E, Reps J, Chan You S, Kim C, John H (2024). DeepPatientLevelPrediction: Deep Learning For Patient Level Prediction Using Data In The OMOP Common Data Model. R package version 2.0.3.9999, https://github.com/OHDSI/DeepPatientLevelPrediction. 

@Manual{,
   title = {DeepPatientLevelPrediction: Deep Learning For Patient Level Prediction Using Data In The OMOP Common Data Model},
   author = {Egill Fridgeirsson and Jenna Reps and Seng {Chan You} and Chungsoo Kim and Henrik John},
-  year = {2023},
+  year = {2024},
   note = {R package version 2.0.3.9999},
   url = {https://github.com/OHDSI/DeepPatientLevelPrediction},
 }
diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml index 88c8e4d..fa12f57 100644 --- a/dev/pkgdown.yml +++ b/dev/pkgdown.yml @@ -5,5 +5,5 @@ articles: BuildingDeepModels: BuildingDeepModels.html FirstModel: FirstModel.html Installing: Installing.html -last_built: 2023-12-23T14:53Z +last_built: 2024-02-22T12:37Z diff --git a/dev/reference/index.html b/dev/reference/index.html index e8529d0..07b1898 100644 --- a/dev/reference/index.html +++ b/dev/reference/index.html @@ -129,6 +129,10 @@

All functions setEstimator()

setEstimator

+ +

setFinetuner()

+ +

setFinetuner

setMultiLayerPerceptron()

@@ -141,6 +145,14 @@

All functions setTransformer()

create settings for training a non-temporal transformer

+ +

snakeCaseToCamelCase()

+ +

Convert a camel case string to snake case

+ +

snakeCaseToCamelCaseNames()

+ +

Convert the names of an object from snake case to camel case

trainingCache

diff --git a/dev/reference/setFinetuner.html b/dev/reference/setFinetuner.html new file mode 100644 index 0000000..a2c02db --- /dev/null +++ b/dev/reference/setFinetuner.html @@ -0,0 +1,124 @@ + +setFinetuner — setFinetuner • DeepPatientLevelPrediction + + +
+
+ + + +
+
+
+

setFinetuner

+ Source: R/TransferLearning.R + +
+ +
+

creates settings for using transfer learning to finetune a model

+
+ +
+ 
setFinetuner(modelPath, estimatorSettings = setEstimator())
+
+ +
+

Arguments

+
modelPath
+

path to existing plpModel directory

+ + +
estimatorSettings
+

settings created with `setEstimator`

+ +
+ +
+ +
+ + +
+

Developed by Egill Fridgeirsson, Jenna Reps, Seng Chan You, Chungsoo Kim, Henrik John.

+
+ +
+

Site built with pkgdown 2.0.7.

+
+ +
+ + + + + + + + diff --git a/dev/reference/snakeCaseToCamelCase.html b/dev/reference/snakeCaseToCamelCase.html new file mode 100644 index 0000000..3aabef1 --- /dev/null +++ b/dev/reference/snakeCaseToCamelCase.html @@ -0,0 +1,126 @@ + +Convert a camel case string to snake case — snakeCaseToCamelCase • DeepPatientLevelPrediction + + +
+
+ + + +
+
+
+

Convert a camel case string to snake case

+ Source: R/HelperFunctions.R + +
+ +
+

Convert a camel case string to snake case

+
+ +
+ 
snakeCaseToCamelCase(string)
+
+ +
+

Arguments

+
string
+

The string to be converted

+ +
+
+

Value

+ + +

A string

+
+ +
+ +
+ + +
+

Developed by Egill Fridgeirsson, Jenna Reps, Seng Chan You, Chungsoo Kim, Henrik John.

+
+ +
+

Site built with pkgdown 2.0.7.

+
+ +
+ + + + + + + + diff --git a/dev/reference/snakeCaseToCamelCaseNames.html b/dev/reference/snakeCaseToCamelCaseNames.html new file mode 100644 index 0000000..251b4cb --- /dev/null +++ b/dev/reference/snakeCaseToCamelCaseNames.html @@ -0,0 +1,126 @@ + +Convert the names of an object from snake case to camel case — snakeCaseToCamelCaseNames • DeepPatientLevelPrediction + + +
+
+ + + +
+
+
+

Convert the names of an object from snake case to camel case

+ Source: R/HelperFunctions.R + +
+ +
+

Convert the names of an object from snake case to camel case

+
+ +
+ 
snakeCaseToCamelCaseNames(object)
+
+ +
+

Arguments

+
object
+

The object of which the names should be converted

+ +
+
+

Value

+ + +

The same object, but with converted names.

+
+ +
+ +
+ + +
+

Developed by Egill Fridgeirsson, Jenna Reps, Seng Chan You, Chungsoo Kim, Henrik John.

+
+ +
+

Site built with pkgdown 2.0.7.

+
+ +
+ + + + + + + + diff --git a/dev/sitemap.xml b/dev/sitemap.xml index 2432bf4..b36b3da 100644 --- a/dev/sitemap.xml +++ b/dev/sitemap.xml @@ -60,6 +60,9 @@ /reference/setEstimator.html + + /reference/setFinetuner.html + /reference/setMultiLayerPerceptron.html @@ -69,6 +72,12 @@ /reference/setTransformer.html + + /reference/snakeCaseToCamelCase.html + + + /reference/snakeCaseToCamelCaseNames.html + /reference/trainingCache.html