_pkgdown.yml

template:
  params:
    bootswatch: cosmo

home:
  links:
  - text: Ask a question
    href: http://forums.ohdsi.org
  - text: DQD Example Output
    href: https://data.ohdsi.org/DataQualityDashboardMDCD/
    
navbar:
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - checks
    - news
    right: [hades, github]
  components:
    home:
      icon: fa-home fa-lg
      href: index.html
    intro:
      text: Get started
      href: articles/DataQualityDashboard.html
    reference:
      text: Reference
      href: reference/index.html
    news:
      text: Changelog
      href: news/index.html
    articles:
      text: Articles
      menu:
      - text: Check Type Definitions
        href: articles/CheckTypeDescriptions.html
      - text: DQ Check Failure Thresholds
        href: articles/Thresholds.html
      - text: DQ Check Statuses
        href: articles/CheckStatusDefinitions.html
      - text: Adding a New Data Quality Check
        href: articles/AddNewCheck.html
      - text: DQD for Cohorts
        href: articles/DqdForCohorts.html
      - text: SQL-only Mode
        href: articles/SqlOnly.html
    checks:
      text: NEW! Data Quality Check Types
      menu:
      - text: Index
        href: articles/checkIndex.html
      - text: cdmTable
        href: articles/checks/cdmTable.html
      - text: cdmField
        href: articles/checks/cdmField.html
      - text: cdmDatatype
        href: articles/checks/cdmDatatype.html
      - text: isPrimaryKey
        href: articles/checks/isPrimaryKey.html
      - text: isForeignKey
        href: articles/checks/isForeignKey.html
      - text: isRequired
        href: articles/checks/isRequired.html
      - text: fkDomain
        href: articles/checks/fkDomain.html
      - text: fkClass
        href: articles/checks/fkClass.html
      - text: measurePersonCompleteness
        href: articles/checks/measurePersonCompleteness.html
      - text: measureValueCompleteness
        href: articles/checks/measureValueCompleteness.html
      - text: isStandardValidConcept
        href: articles/checks/isStandardValidConcept.html
      - text: standardConceptRecordCompleteness
        href: articles/checks/standardConceptRecordCompleteness.html
      - text: sourceConceptRecordCompleteness
        href: articles/checks/sourceConceptRecordCompleteness.html
      - text: sourceValueCompleteness
        href: articles/checks/sourceValueCompleteness.html
      - text: plausibleAfterBirth
        href: articles/checks/plausibleAfterBirth.html
      - text: plausibleBeforeDeath
        href: articles/checks/plausibleBeforeDeath.html
      - text: plausibleStartBeforeEnd
        href: articles/checks/plausibleStartBeforeEnd.html
      - text: plausibleValueHigh
        href: articles/checks/plausibleValueHigh.html
      - text: plausibleValueLow
        href: articles/checks/plausibleValueLow.html
      - text: withinVisitDates
        href: articles/checks/withinVisitDates.html
      - text: measureConditionEraCompleteness
        href: articles/checks/measureConditionEraCompleteness.html
    hades:
      text: hadesLogo
      href: https://ohdsi.github.io/Hades
  
reference:
  - title: "Execution"
    desc: >
      Function for running data quality checks
    contents:
      - executeDqChecks
      - writeJsonResultsToTable
  - title: "View Dashboard"
    desc: >
      Function for viewing the data quality dashboard
    contents:
      - viewDqDashboard
  - title: "Re-evaluate Thresholds"
    desc: >
      Function to take a set of DQD results and re-evaluate them against new thresholds
    contents: reEvaluateThresholds
  - title: "List all DQD Checks"
    desc: > 
      Function to list all checks run by the application
    contents: listDqChecks
  - title: "Write DQD results to a CSV"
    desc: > 
      Function to write the JSON results to a csv file
    contents: writeJsonResultsToCsv
  - title: "Convert results JSON file case"
    desc: > 
      Function to convert the case of a results JSON file between snakecase and camelcase
    contents: convertJsonResultsFileCase
  - title: "Write database results to a JSON file"
    desc: > 
      Function to write DQD results from a database table into a JSON file
    contents: writeDBResultsToJson

url: https://ohdsi.github.io/DataQualityDashboard/