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NEWS.md

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ClinicalCharacteristics 0.3.4

  • Hot fix...count distinct subjects in continuous summary

ClinicalCharacteristics 0.3.3

  • Hot fix...count distinct subjects in categorical summary

ClinicalCharacteristics 0.3.2

  • Add categorization for count char
  • export listLabUnitCombos

ClinicalCharacteristics 0.3.1

  • hot fix add custom breaks function

ClinicalCharacteristics 0.3.0

  • change categorization to case_when statements
  • improve lab char summaries
  • separate run clinChar and save

ClinicalCharacteristics 0.2.10

  • add source concepts as option to chars
  • add tempEmulationSchema for snowflake
  • add new package maintainers

ClinicalCharacteristics 0.2.9

  • hot fix asCount param in specialty Char

ClinicalCharacteristics 0.2.8

  • summarize specialty by count
  • fix summary of timeIN (inpatient and cohort)

ClinicalCharacteristics 0.2.7

  • add conceptType for timeTo char

ClinicalCharacteristics 0.2.6

  • bug fix multi-cohort count #20

ClinicalCharacteristics 0.2.5

  • conceptType improvements #15
    • add conceptType toggle to presenceChar
    • add findConceptType function to help determine type concepts in domain
    • add sql function for generalizing conceptType Where statement
  • tempEmulationSchema fix #16
    • add tempEmulationSchema for snowflake
    • drops all temp tables upon disconnect
  • clean-up runClinicalCharacteristics #13
    • separate out score, categorize and summarize fns
    • additional code clean-up
  • Early reporting function createReport #14
    • able to make report md from certain chars not all

ClinicalCharacteristics 0.2.4

  • add databaseId column
  • add orderId as the order of the char and replace categoryId with a stagnant id

ClinicalCharacteristics 0.2.3

  • bug fix specialty visit
  • bug fix dat table interface (drop table and suffix for dat table name)
  • bug fix cost labels
  • bug fix score and categorize issues in snowflake

ClinicalCharacteristics 0.2.2

  • bug fix yearChar to add labels going back to 1987
  • bug fix conceptType in CountChar

ClinicalCharacteristics 0.2.1

  • bug fix to aggregate yearChar
  • bug fix label table for year coerce to char

ClinicalCharacteristics 0.2.0

  • Remove arrow dependency ==> aggregate on dbms
  • add labels method for char classes
  • add categorize sql
  • add charlson sql
  • condense runClinicalCharacteristics to tabulate and save results

ClinicalCharacteristics 0.1.0

  • overhaul software to remove FeatureExtraction dependency
  • make clinChar object => specify data extraction
  • add extract objects => specify types of extraction by demographics or domains
  • summarize the clinChar object
  • export summary to csv
  • Build out the circe sql to pull concept sets
  • as_sql method to coerce class into sql
  • Available characterizations:
    • Presence: Drug, Condition, Procedure, Visit, Measurement, Observation
    • Count: Drug, Condition, Procedure, Visit, Measurement, Observation
    • Cost: Drug, Procedure, Visit
    • TimeTo: Drug, Condition, Procedure, Visit, Measurement, Observation
    • TimeIn: Cohort, Inpatient
    • Demographics: age, race, gender, ethnicity, location, index year
    • Visit Detail: care site and provider specialty
  • Functions to categorize continuous vars (i.e. age to age10yrGroups)
  • Functions to score categorical vars (i.e. conditions to Charlson Index)

ClinicalCharacteristics 0.0.2

  • add tempEmulationSchema for snowflake
  • update settings function ui

ClinicalCharacteristics 0.0.1

  • Fix dealing with temporal covariates
  • Add domain count
  • Add Visit characteristics
  • Add measurement characteristics
  • Start putting together table shells

ClinicalCharacteristics 0.0.0.9000

  • Initial version of package
  • Build characteristics and output to folder