Merge pull request #379 from NeuroTechX/develop

merge v0.5.0 into master

Author: sylvchev

.coveragerc

@@ -1,10 +1,10 @@
 [run]
 branch = True
 source = moabb
-include = */moabb/*
 omit =
     */docs/*
     */pipelines/*
+    */tests/*
 
 [report]
 exclude_lines =

.dockerignore

@@ -0,0 +1,146 @@
+# Created by .ignore support plugin (hsz.mobi)
+### Python template
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# folder from moabb project
+dataset/
+results/
+output/

.github/workflows/docs.yml

@@ -5,39 +5,37 @@ on:
     branches: [master, develop]
   pull_request:
     branches: [master, develop]
-    paths:
-      - "docs/**"
 
 jobs:
   build_docs:
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: true
       matrix:
-        os: [ubuntu-18.04]
+        os: [ubuntu-latest]
         python-version: ["3.9"]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Create local data folder
         run: |
           mkdir ~/mne_data
 
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
 
       - name: Install Poetry
-        uses: snok/install-poetry@v1.1.6
+        uses: snok/install-poetry@v1
         with:
           virtualenvs-create: true
           virtualenvs-in-project: true
 
       - name: Cache datasets and docs
         id: cached-dataset-docs
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           key: doc-${{ github.head_ref }}-${{ hashFiles('moabb/datasets/**') }}
           path: |
@@ -46,10 +44,10 @@ jobs:
 
       - name: Install dependencies
         if: steps.cached-dataset-docs.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root
+        run: poetry install --no-interaction --no-root --with docs,deeplearning
 
       - name: Install library
-        run: poetry install --no-interaction
+        run: poetry install --no-interaction --with docs,deeplearning
 
       - name: Build docs
         run: |
@@ -68,26 +66,26 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-18.04]
+        os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Create local data folder
         run: |
           mkdir ~/mne_data
 
       - name: Cache datasets and docs
         id: cached-dataset-docs
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           key: doc-${{ github.head_ref }}-${{ hashFiles('moabb/datasets/**') }}
           path: |
             ~/mne_data
             docs/build
 
       - name: Checkout moabb.github.io
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: "NeuroTechX/moabb.github.io"
           path: moabb-ghio
@@ -111,26 +109,26 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-18.04]
+        os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Create local data folder
         run: |
           mkdir ~/mne_data
 
       - name: Cache datasets and docs
         id: cached-dataset-docs
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           key: doc-${{ github.head_ref }}-${{ hashFiles('moabb/datasets/**') }}
           path: |
             ~/mne_data
             docs/build
 
       - name: Checkout gh pages
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           ref: gh-pages
           path: moabb-ghpages
@@ -146,6 +144,17 @@ jobs:
           git commit -m "GH Actions update of GH pages ($GITHUB_RUN_ID - $GITHUB_RUN_NUMBER)"
           git push origin gh-pages
 
+      - name: Deploy to moabb.neurotechx.com/
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/develop'}}
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          deploy_key: ${{ secrets.ACTIONS_DEPLOY_KEY }}
+          external_repository: NeuroTechX/moabb.github.io
+          destination_dir: docs/
+          publish_branch: master
+          publish_dir: ./docs/build/html
+          cname: moabb.neurotechx.com/
+
       # Previous test with moabb GH pages, official docs point to moabb.github.io
       ###########################################################################
       # Since we want the URL to be neurotechx.github.io/docs/ the html output needs to be put in a ./docs subfolder of the publish_dir

.github/workflows/test-devel.yml

@@ -13,16 +13,16 @@ jobs:
     strategy:
       fail-fast: true
       matrix:
-        os: [ubuntu-18.04, windows-latest, macOS-latest]
-        python-version: ["3.7"]
+        os: [ubuntu-latest, windows-latest, macOS-latest]
+        python-version: ["3.8"]
     defaults:
       run:
         shell: bash
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -35,7 +35,7 @@ jobs:
       - name: Load cached venv
         if: runner.os != 'Windows'
         id: cached-poetry-dependencies
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: .venv
           key:
@@ -46,43 +46,32 @@ jobs:
         if: |
           (runner.os != 'Windows') &&
           (steps.cached-poetry-dependencies.outputs.cache-hit != 'true')
-        run: poetry install --no-interaction --no-root --no-dev
+        run: poetry install --no-interaction --no-root --with deeplearning
 
-      - name: Install library
-        run: poetry install --no-interaction --no-dev
+      - name: Install library (Linux/OSX)
+        if: ${{ runner.os != 'Windows' }}
+        run: poetry install --no-interaction --with deeplearning
+
+      - name: Install library (Windows)
+        if: ${{ runner.os == 'Windows' }}
+        run: poetry install --no-interaction
 
       - name: Run tests
         run: |
           source $VENV
           poetry run coverage run -m unittest moabb.tests
+          poetry run coverage xml
 
       - name: Run pipelines
         run: |
           source $VENV
           poetry run python -m moabb.run --pipelines=./moabb/tests/test_pipelines/ --verbose
 
       - name: Upload Coverage to Codecov
-        uses: codecov/codecov-action@v2
+        uses: codecov/codecov-action@v3
         if: success()
         with:
           verbose: true
           directory: /home/runner/work/moabb/moabb
-          files: ./.coverage
-
-  lint:
-    name: lint ${{ matrix.os }}, py-${{ matrix.python-version }}
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: true
-      matrix:
-        os: [ubuntu-18.04]
-        python-version: ["3.7"]
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Setup Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - uses: pre-commit/[email protected]
+          files: ./.coverage,coverage.xml
+          env_vars: OS,PYTHON