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conda_environment.yml
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name: /vf/users/johnsonnicl/test_xylena_pseudobulk/pseudo_type_env
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- _sysroot_linux-64_curr_repodata_hack=3=h69a702a_13
- argcomplete=3.0.8=pyhd8ed1ab_0
- arpack=3.8.0=nompi_h0baa96a_101
- binutils_impl_linux-64=2.40=hf600244_0
- bioconductor-annotate=1.76.0=r42hdfd78af_0
- bioconductor-annotationdbi=1.60.0=r42hdfd78af_0
- bioconductor-annotationfilter=1.22.0=r42hdfd78af_0
- bioconductor-beachmat=2.14.0=r42hc247a5b_0
- bioconductor-biobase=2.58.0=r42hc0cfd56_0
- bioconductor-biocfilecache=2.6.0=r42hdfd78af_0
- bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
- bioconductor-biocio=1.8.0=r42hdfd78af_0
- bioconductor-biocparallel=1.32.5=r42hc247a5b_0
- bioconductor-biomart=2.54.0=r42hdfd78af_0
- bioconductor-biostrings=2.66.0=r42hc0cfd56_0
- bioconductor-biovizbase=1.46.0=r42hc0cfd56_0
- bioconductor-bsgenome=1.66.3=r42hdfd78af_0
- bioconductor-data-packages=20230420=hdfd78af_0
- bioconductor-delayedarray=0.24.0=r42hc0cfd56_0
- bioconductor-delayedmatrixstats=1.20.0=r42hdfd78af_0
- bioconductor-deseq2=1.38.0=r42hc247a5b_0
- bioconductor-ensdb.hsapiens.v86=2.99.0=r42hdfd78af_10
- bioconductor-ensembldb=2.22.0=r42hdfd78af_0
- bioconductor-genefilter=1.80.0=r42h38f54d8_0
- bioconductor-geneplotter=1.76.0=r42hdfd78af_0
- bioconductor-genomeinfodb=1.34.9=r42hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
- bioconductor-genomicalignments=1.34.0=r42hc0cfd56_0
- bioconductor-genomicfeatures=1.50.2=r42hdfd78af_0
- bioconductor-genomicranges=1.50.0=r42hc0cfd56_0
- bioconductor-glmgampoi=1.10.0=r42hc247a5b_0
- bioconductor-hdf5array=1.26.0=r42h58c1800_2
- bioconductor-iranges=2.32.0=r42hc0cfd56_0
- bioconductor-keggrest=1.38.0=r42hdfd78af_0
- bioconductor-limma=3.54.0=r42ha9d7317_1
- bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
- bioconductor-protgenerics=1.30.0=r42hdfd78af_0
- bioconductor-rhdf5=2.42.0=r42h20ea6f5_2
- bioconductor-rhdf5filters=1.10.0=r42hc247a5b_0
- bioconductor-rhdf5lib=1.20.0=r42hc0cfd56_0
- bioconductor-rhtslib=2.0.0=r42hc0cfd56_0
- bioconductor-rsamtools=2.14.0=r42hc247a5b_0
- bioconductor-rtracklayer=1.58.0=r42h58c1800_2
- bioconductor-s4vectors=0.36.0=r42hc0cfd56_0
- bioconductor-singlecellexperiment=1.20.0=r42hdfd78af_0
- bioconductor-sparsematrixstats=1.10.0=r42hc247a5b_0
- bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
- bioconductor-variantannotation=1.44.0=r42hc0cfd56_0
- bioconductor-xvector=0.38.0=r42hc0cfd56_0
- bioconductor-zlibbioc=1.44.0=r42hc0cfd56_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.5.7=hbcca054_0
- cairo=1.16.0=ha61ee94_1014
- curl=8.1.2=h409715c_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- geos=3.11.2=hcb278e6_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- harfbuzz=6.0.0=h8e241bc_0
- icu=70.1=h27087fc_0
- igraph=0.7.1=0
- jpeg=9e=h0b41bf4_3
- jq=1.6=h36c2ea0_1000
- kernel-headers_linux-64=3.10.0=h4a8ded7_13
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=h81ceb04_0
- ld_impl_linux-64=2.40=h41732ed_0
- leidenalg=0.8.3=py38h82c7cc0_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=8.1.2=h409715c_0
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.2=hebfc3b9_0
- libgomp=12.2.0=h65d4601_19
- libhwloc=2.9.1=hd6dc26d_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsanitizer=12.2.0=h46fd767_19
- libsqlite=3.41.2=h2797004_1
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=h6adf6a1_2
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- make=4.3=hd18ef5c_1
- metis=5.1.0=h58526e2_1006
- mpfr=4.2.0=hb012696_0
- ncurses=6.3=h27087fc_1
- numpy=1.24.3=py38h59b608b_0
- oniguruma=6.9.8=h166bdaf_0
- openssl=3.1.1=hd590300_1
- pandas=2.0.1=py38h01efb38_1
- pandoc=2.19.2=h32600fe_2
- pango=1.50.14=hd33c08f_0
- pcre2=10.40=hc3806b6_0
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycairo=1.23.0=py38h190342e_0
- python=3.8.16=he550d4f_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-igraph=0.7.1.post7=py38h516909a_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.8=3_cp38
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py38h0a891b7_5
- r-abind=1.4_5=r42hc72bb7e_1004
- r-ashr=2.2_54=r42h7525677_1
- r-askpass=1.1=r42h06615bd_3
- r-assertthat=0.2.1=r42hc72bb7e_3
- r-backports=1.4.1=r42h06615bd_1
- r-base=4.2.2=ha7d60f8_3
- r-base64enc=0.1_3=r42h06615bd_1005
- r-bh=1.81.0_1=r42hc72bb7e_0
- r-bit=4.0.5=r42h06615bd_0
- r-bit64=4.0.5=r42h06615bd_1
- r-bitops=1.0_7=r42h06615bd_1
- r-blob=1.2.4=r42hc72bb7e_0
- r-broom=1.0.4=r42hc72bb7e_0
- r-bslib=0.4.2=r42hc72bb7e_0
- r-cachem=1.0.8=r42h57805ef_0
- r-callr=3.7.3=r42hc72bb7e_0
- r-catools=1.18.2=r42h7525677_1
- r-cellranger=1.1.0=r42hc72bb7e_1005
- r-checkmate=2.2.0=r42h57805ef_0
- r-cli=3.6.1=r42h38f115c_0
- r-clipr=0.8.0=r42hc72bb7e_1
- r-cluster=2.1.4=r42h8da6f51_0
- r-codetools=0.2_19=r42hc72bb7e_0
- r-colorspace=2.1_0=r42h133d619_0
- r-commonmark=1.9.0=r42h133d619_0
- r-conflicted=1.2.0=r42h785f33e_0
- r-cowplot=1.1.1=r42hc72bb7e_1
- r-cpp11=0.4.3=r42hc72bb7e_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-crosstalk=1.2.0=r42hc72bb7e_1
- r-curl=4.3.3=r42h06615bd_1
- r-data.table=1.14.8=r42h133d619_0
- r-dbi=1.1.3=r42hc72bb7e_1
- r-dbplyr=2.3.2=r42hc72bb7e_0
- r-deldir=1.0_6=r42h8da6f51_1
- r-dichromat=2.0_0.1=r42ha770c72_1
- r-digest=0.6.31=r42h38f115c_0
- r-dplyr=1.1.2=r42ha503ecb_0
- r-dqrng=0.3.0=r42h7525677_1
- r-dtplyr=1.3.1=r42hc72bb7e_0
- r-ellipsis=0.3.2=r42h06615bd_1
- r-etrunct=0.1=r42hc72bb7e_1004
- r-evaluate=0.21=r42hc72bb7e_0
- r-fansi=1.0.4=r42h133d619_0
- r-farver=2.1.1=r42h7525677_1
- r-fastmap=1.1.1=r42h38f115c_0
- r-fastmatch=1.1_3=r42h06615bd_1
- r-filelock=1.0.2=r42h133d619_1003
- r-fitdistrplus=1.1_11=r42hc72bb7e_0
- r-fnn=1.1.3.2=r42h38f115c_0
- r-fontawesome=0.5.1=r42hc72bb7e_0
- r-forcats=1.0.0=r42hc72bb7e_0
- r-foreach=1.5.2=r42h6115d3f_0
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- r-formatr=1.14=r42hc72bb7e_0
- r-formula=1.2_5=r42hc72bb7e_0
- r-fs=1.6.2=r42ha503ecb_0
- r-futile.logger=1.4.3=r42hc72bb7e_1004
- r-futile.options=1.0.1=r42hc72bb7e_1003
- r-future=1.32.0=r42hc72bb7e_0
- r-future.apply=1.10.0=r42hc72bb7e_0
- r-gargle=1.4.0=r42h785f33e_0
- r-generics=0.1.3=r42hc72bb7e_1
- r-ggplot2=3.4.2=r42hc72bb7e_0
- r-ggrepel=0.9.3=r42h38f115c_0
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- r-goftest=1.2_3=r42h06615bd_1
- r-googledrive=2.1.0=r42hc72bb7e_0
- r-googlesheets4=1.1.0=r42h785f33e_0
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- r-gridextra=2.3=r42hc72bb7e_1004
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- r-ica=1.0_3=r42hc72bb7e_1
- r-ids=1.0.1=r42hc72bb7e_2
- r-igraph=1.4.2=r42h65ed38e_0
- r-interp=1.1_4=r42h38f115c_0
- r-invgamma=1.1=r42hc72bb7e_2
- r-irlba=2.3.5.1=r42h5f7b363_0
- r-isoband=0.2.7=r42h38f115c_1
- r-iterators=1.0.14=r42h6115d3f_0
- r-jpeg=0.1_10=r42h06615bd_0
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- r-jsonlite=1.8.4=r42h133d619_0
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- r-pbapply=1.7_0=r42hc72bb7e_0
- r-pillar=1.9.0=r42hc72bb7e_0
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-plogr=0.2.0=r42hc72bb7e_1004
- r-plotly=4.10.1=r42hc72bb7e_0
- r-plyr=1.8.8=r42h7525677_0
- r-png=0.1_8=r42h10cf519_0
- r-polyclip=1.10_4=r42h7525677_0
- r-prettyunits=1.1.1=r42hc72bb7e_2
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