Find training materials related to a specific use-case in Galaxy Training resource

[haesleinhuepf]

I would be great to identify training resources (and missing steps) related to a concrete example workflow in Galaxy such as:

• Create an account in Galaxy
• Upload Histology Data in Galaxy
• Segment Nuclei using a Galaxy Workflow
• Collect statistics / measurements
• Summarize results, e.g. decide cancer versus no cancer (or similar)

If these steps are all there, it might be a great idea to write a blog post in focalplane explaining the entire workflow and point to the resources in Galaxy Training database: https://training.galaxyproject.org/

Overall goal: Advertise that typical NFDI4BioImage tasks can be done within Galaxy.

@marabuuu could you do me the favor and look into this? If we cannot find specific stuff, @bgruening can guide us.

Big thanks you two!

[bgruening]

Huhu!

• Create an account in Galaxy
  • https://training.galaxyproject.org/training-material/faqs/galaxy/account_create.html (screenshot and already outdated ;))
• Upload Histology Data in Galaxy
  • maybe as a start: https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-short/tutorial.html#upload-a-file similar things are in every tutorial dealing with data
  • There are specific FAQs here https://training.galaxyproject.org/training-material/faqs/galaxy/#data%20upload
• Segment Nuclei using a Galaxy Workflow
• Collect statistics / measurements
• Summarize results, e.g. decide cancer versus no cancer (or similar)

Let me know if I can help in any way!

[marabuuu]

Sounds interesting, I will look into it 🌞