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ARAs should respond to a creative query asking for genes whose activity or abundance is decreased by an input chemical. TRAPI:
{ "message": { "query_graph": { "nodes": { "gene": { "categories": [ "biolink:Gene" ] }, "chemical": { "categories": [ "biolink:ChemicalEntity" ], "ids": [ "$INPUTID" ] } }, "edges": { "t_edge": { "object": "gene", "subject": "chemical", "predicates": [ "biolink:affects" ], "knowledge_type": "inferred", "qualifier_constraints": [ { "qualifier_set": [ { "qualifier_type_id": "biolink:object_aspect_qualifier", "qualifier_value": "activity_or_abundance" }, { "qualifier_type_id": "biolink:object_direction_qualifier", "qualifier_value": "decreased" } ] } ] } } } } }
$INPUTID will be the CURIE of the input chemical. Some chemicals that can be used for testing include:
$INPUTID
Amphetamine PUBCHEM.COMPOUND:3007 Dextroamphetamine PUBCHEM.COMPOUND:5826 Methylphenidate PUBCHEM.COMPOUND:44246724 Metformin PUBCHEM.COMPOUND:4091 Atorvastatin PUBCHEM.COMPOUND:60823 Valproic Acid PUBCHEM.COMPOUND:88111 Vitamin A PUBCHEM.COMPOUND:445354 Vitamin C PUBCHEM.COMPOUND:54670067 Vitamin D PUBCHEM.COMPOUND:5280795 Glucose PUBCHEM.COMPOUND:79025 Magnesium PUBCHEM.COMPOUND:888 DHEA PUBCHEM.COMPOUND:5881 Testosterone PUBCHEM.COMPOUND:6013 Estrogen PUBCHEM.COMPOUND:5991 Somatostatin PUBCHEM.COMPOUND:16129681 Amitriptyline PUBCHEM.COMPOUND:2160 Gabapentin PUBCHEM.COMPOUND:3446 Propranolol PUBCHEM.COMPOUND:4946 Sumatriptan PUBCHEM.COMPOUND:5358 Palmitic acid PUBCHEM.COMPOUND:12358543
The text was updated successfully, but these errors were encountered:
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ARAs should respond to a creative query asking for genes whose activity or abundance is decreased by an input chemical. TRAPI:
$INPUTID
will be the CURIE of the input chemical. Some chemicals that can be used for testing include:The text was updated successfully, but these errors were encountered: