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ARAs should respond to the following TRAPI query:
{ "message": { "query_graph": { "nodes": { "gene": { "categories": [ "biolink:Gene" ], "ids": [ "$INPUTID$" ] }, "chemical": { "categories": [ "biolink:ChemicalEntity" ] } }, "edges": { "t_edge": { "object": "gene", "subject": "chemical", "predicates": [ "biolink:affects" ], "knowledge_type": "inferred", "qualifier_constraints": [ { "qualifier_set": [ { "qualifier_type_id": "biolink:object_aspect_qualifier", "qualifier_value": "activity_or_abundance" }, { "qualifier_type_id": "biolink:object_direction_qualifier", "qualifier_value": "increased" } ] } ] } } } } }
Where $INPUTID$ will be replaced with a CURIE for a particular gene.
$INPUTID$
Some genes that can be used for testing:
MAPK8IP3 NCBIGene:23162 TP53 NCBIGene:7157 P450 NCBIGene:1594 XIST NCBIGene:7503 TSIX NCBIGene:9383 ADNP NCBIGene:23394 BORCS8-MEF2B MMP9 NCBIGene:4318 MEF2C NCBIGene:4208 MALAT1 NCBIGene:378938 DYRK1A NCBIGene:1859 PCSK1N NCBIGene:27344 TTR NCBIGene:7276 GNAS NCBIGene:2778 FAU NCBIGene:2197 IAPP NCBIGene:3375 SCG5 NCBIGene:6447 B2M NCBIGene:567 GAPDH NCBIGene:2597 Cytochrome oxidase NCBIGene:4512 Cutochrome B RBP4 NCBIGene:5950 NGLY1 NCBIGene:55768 RHOBTB2 NCBIGene:23221 WDFY3 NCBIGene:23001 PPP3CA NCBIGene:5530 KCNT1 NCBIGene:57582 NALCN NCBIGene:259232 CACNA1A NCBIGene:773 DHX30 NCBIGene:22907 SAMD9L NCBIGene:219285 BICD2 NCBIGene:23299 FHL1 NCBIGene:3075 ATF3 NCBIGene:467 SETBP1 NCBIGene:26040 Engase NCBIGene:64772
The text was updated successfully, but these errors were encountered:
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ARAs should respond to the following TRAPI query:
Where
$INPUTID$
will be replaced with a CURIE for a particular gene.Some genes that can be used for testing:
The text was updated successfully, but these errors were encountered: