Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CentOS 6 installation problems #35

Open
mpoelchau opened this issue Nov 4, 2019 · 0 comments
Open

CentOS 6 installation problems #35

mpoelchau opened this issue Nov 4, 2019 · 0 comments

Comments

@mpoelchau
Copy link
Contributor

Setting up an issue to document installation problems. On our server (CentOS6) the build failed due to htslib. Here's how I got around it:

  • change htslib configuration: export HTSLIB_CONFIGURE_OPTIONS='--disable-bz2 --disable-lzma'
  • install pysam: pip install pysam
  • then install the pipeline. pip install git+https://github.com/NAL-i5K/remap-gff3.git
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant