This repository contains the output of bioCADDIE WG3 Descriptive Metadata for Datasets., defining the DatA Tag Suite (DATs) model. The presentations and notes from the WG3 activities can be found at this website. This repository contains the different versions of the DATS specification.
The material in this repository is distributed under CC BY-SA 3.0 license.
The document provides links to the different appendices files.
The document provides links to the different appendices files.
- [Metadata Specification - version 1.1 - Draft open for comments (doc)] (https://github.com/biocaddie/WG3-MetadataSpecifications/blob/master/doc/v1.1/NIH-BS2K-bioCADDIE-WG3-MetadataElements-Specification-v1.1.docx)
- Metadata Specification - version 1.0 (PDF file)
- Appendix 1 - Metadata Mapping File v1 (Spreadsheet)
- Appendix 2 - Metadata Elements File v1 (Spreadsheet)
The python code included in the repository validates the DATS JSON schemas and the DATS JSON instances against the schemas. To execute the code, it is recommended to use a virtual environment, following these steps:
- If not already installed in your system, first install the virtual environment via
pip:pip install virtualenv - Create a virtual environament:
virtualenv venv - Then, activate the virtual environment:
source venv/bin/activate - Install the requirements:
pip install -r requirements.txt - Finally, you can inspect and run the tests to validate the DATS schemas and JSON instances against the schemas.
python setup.py test