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ModifyGeneName.cpp
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#include <iostream>
#include <string>
#include <sstream>
#include <fstream>
#include <vector>
#include <map>
#include <cstdlib>
#include <algorithm>
#include <boost/algorithm/string/split.hpp>
#include <boost/algorithm/string.hpp>
#include <boost/lexical_cast.hpp>
using namespace std;
using namespace boost;
int main (int argc, char **argv) {
ifstream linf(argv[1]);
ifstream inf(argv[2]);
map<string,string> gname_map;
while(linf){
string strInput;
getline(linf, strInput);
if(strInput.length() > 0){
vector<string> vec;
split(vec, strInput, is_any_of("\t"));
gname_map[vec[0]] = vec[1];
}
}
map<string,string>::iterator it;
while(inf){
string strInput;
getline(inf, strInput);
if(strInput.length() > 0){
vector<string> vec;
split(vec, strInput, is_any_of("\t"));
it = gname_map.find(vec[1]);
if(it == gname_map.end()) cout << "Alert" << endl;
else{
cout << vec[0] << '\t' << it->second;
for(int i = 2; i < vec.size(); ++i){
cout << '\t' << vec[i];
}
cout << endl;
}
}
}
linf.close(); inf.close();
return 0;
}