Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Deblur run error #63

Open
crisper78 opened this issue Feb 15, 2024 · 1 comment
Open

Deblur run error #63

crisper78 opened this issue Feb 15, 2024 · 1 comment

Comments

@crisper78
Copy link

Hi, I am trying to run QIIME2 pipeline with my own data, but I am having an error when trying to run Deblur. I tried to fix the trim length but still having the same errors.

Plugin error from deblur:
Command '['deblur', 'workflow', '--seqs-fp', '/tmp/qiime2/cristian.perezcorral/data/d53cdfe0-b4e0-4be3-ac93-5993557b01c0/data', '--output-dir', '/tmp/tmpddas9x25', '--mean-error', '0.005', '--indel-prob', '0.01', '--indel-max', '3', '--trim-length', '-1', '--left-trim-length', '0', '--min-reads', '1', '--min-size', '2', '--jobs-to-start', '2', '-w', '--keep-tmp-files']' returned non-zero exit status 1.

I am following the pipeline we ran at the CBW-IMPACTT ws

@fconstancias
Copy link

I would recommend following the dada2 tutorial instead.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants