Compilation error when running `make` for DTB binaries on macOS 10.12

[jguillon]

Hi,

I am getting the following error after I ran cmake . and make in the src/DTB folder:

[ 25%] Linking CXX executable DTB_gfa
Undefined symbols for architecture x86_64:
  "_Xznzclose", referenced from:
      _nifti_fileexists in libniftiio.a(nifti1_io.o)
      _nifti_write_ascii_image in libniftiio.a(nifti1_io.o)
      _nifti_makeimgname in libniftiio.a(nifti1_io.o)
      _nifti_image_write_hdr_img2 in libniftiio.a(nifti1_io.o)
      _nifti_makehdrname in libniftiio.a(nifti1_io.o)
      _nifti_findimgname in libniftiio.a(nifti1_io.o)
      _nifti_image_load_prep in libniftiio.a(nifti1_io.o)
      ...
  "_znzopen", referenced from:
      _nifti_fileexists in libniftiio.a(nifti1_io.o)
      _nifti_write_ascii_image in libniftiio.a(nifti1_io.o)
      _nifti_makeimgname in libniftiio.a(nifti1_io.o)
      _nifti_image_write_hdr_img2 in libniftiio.a(nifti1_io.o)
      _nifti_makehdrname in libniftiio.a(nifti1_io.o)
      _nifti_findimgname in libniftiio.a(nifti1_io.o)
      _nifti_image_load_prep in libniftiio.a(nifti1_io.o)
      ...
  "_znzputs", referenced from:
      _nifti_write_ascii_image in libniftiio.a(nifti1_io.o)
  "_znzread", referenced from:
      _nifti_read_buffer in libniftiio.a(nifti1_io.o)
      _nifti_read_extensions in libniftiio.a(nifti1_io.o)
      _nifti_read_ascii_image in libniftiio.a(nifti1_io.o)
      _nifti_image_read in libniftiio.a(nifti1_io.o)
      _nifti_read_header in libniftiio.a(nifti1_io.o)
      _is_nifti_file in libniftiio.a(nifti1_io.o)
  "_znzrewind", referenced from:
      _nifti_image_read in libniftiio.a(nifti1_io.o)
      _nifti_read_header in libniftiio.a(nifti1_io.o)
  "_znzseek", referenced from:
      _rci_read_data in libniftiio.a(nifti1_io.o)
      _nifti_read_extensions in libniftiio.a(nifti1_io.o)
      _nifti_image_write_hdr_img2 in libniftiio.a(nifti1_io.o)
      _nifti_image_load_prep in libniftiio.a(nifti1_io.o)
      _nifti_read_subregion_image in libniftiio.a(nifti1_io.o)
      _nifti_read_ascii_image in libniftiio.a(nifti1_io.o)
      _nifti_image_load_bricks in libniftiio.a(nifti1_io.o)
      ...
  "_znztell", referenced from:
      _nifti_read_extensions in libniftiio.a(nifti1_io.o)
      _nifti_read_collapsed_image in libniftiio.a(nifti1_io.o)
      _nifti_read_subregion_image in libniftiio.a(nifti1_io.o)
      _nifti_image_load_bricks in libniftiio.a(nifti1_io.o)
  "_znzwrite", referenced from:
      _nifti_write_buffer in libniftiio.a(nifti1_io.o)
      _nifti_write_extensions in libniftiio.a(nifti1_io.o)
      _nifti_write_all_data in libniftiio.a(nifti1_io.o)
      _nifti_image_write_hdr_img2 in libniftiio.a(nifti1_io.o)
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [Applications/DTB_gfa/DTB_gfa] Error 1
make[1]: *** [Applications/DTB_gfa/CMakeFiles/DTB_gfa.dir/all] Error 2
make: *** [all] Error 2

Here are the info about niftilib:

homebrew/science/niftilib: stable 2.0.0
https://niftilib.sourceforge.io/
/usr/local/Cellar/niftilib/2.0.0 (17 files, 872.9KB)
  Built from source on 2017-03-21 at 15:47:09
From: https://github.com/Homebrew/homebrew-science/blob/master/niftilib.rb

Thank you for your help!

[Hsiang-Yuan]

Hi,

I came across the exact same issue on Mac OSX 10.12 system. Could any expert help us to solve the issue?
Thank you very much for the help!