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Need to decide how this would work. Right now it's BYOH (bring your own holdouts), and they are supplied like this:
graph_data: graph: node_path: tests/resources/test_graphs/pos_train_nodes.tsv edge_path: tests/resources/test_graphs/pos_train_edges.tsv pos_validation: edge_path: tests/resources/test_graphs/pos_valid_edges.tsv neg_training: edge_path: tests/resources/test_graphs/neg_train_edges.tsv neg_validation: edge_path: tests/resources/test_graphs/neg_valid_edges.tsv
One way to support either BYOH or having NEAT make holdouts:
graph_data: graph: node_path: tests/resources/test_graphs/pos_train_nodes.tsv edge_path: tests/resources/test_graphs/pos_train_edges.tsv holdout: make_holdouts: type: connected_holdout # only option at the moment random_state: 42 # seed train_size: 0.8 # fraction edge_types: # optional - biolink:interacts_with - biolink:has_gene_product verbose: bool existing_holdouts: # this OR make_holdouts (not both) pos_validation: edge_path: tests/resources/test_graphs/pos_valid_edges.tsv neg_training: edge_path: tests/resources/test_graphs/neg_train_edges.tsv neg_validation: edge_path: tests/resources/test_graphs/neg_valid_edges.tsv
The text was updated successfully, but these errors were encountered:
(note to self - I've already implemented this, essentially just need to expose the code to the YAML)
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Need to decide how this would work. Right now it's BYOH (bring your own holdouts), and they are supplied like this:
One way to support either BYOH or having NEAT make holdouts:
The text was updated successfully, but these errors were encountered: