some issue for installtion

[deadblackhole]

Hello,
I Install phabox2 in primitive way and when I run the'conda install datasets transformers pytorch triton accelerate prodigal-gv',my server is stuck in 'solving environment'.But I can search all these dependencies I mentioned above by using 'conda search'.So do these dependencies require specific versions to avoid possible environmental conflicts? I want to split this command to install only one dependency at a time.

[KennthShang]

Hi @deadblackhole ,

I suppose the answer is no. But it depends on your system (both software and hardware).

In the BioConda recipe, the required package versions (at least passed all the system tested on the BioConda's Actions without any conflicts) are:

    - biopython >=1.84
    - datasets >=3
    - kcounter >=0.1.1
    - fasttree >=2.1.11
    - mafft >=7.525
    - networkx >=3.4
    - numpy >=1.26
    - pandas >=2
    - prodigal-gv >=2.11.0
    - pyarrow >=16
    - pytorch >=2.4
    - scipy >=1.14
    - seaborn-base >=0.13.2
    - transformers >=4
    - blast >=2.16.0
    - diamond =0.9.14
    - mcl >=22.282
    - accelerate >=1.0.1

Please check.

Also, it might be caused by your network sometimes.

Best,
Jiayu

[deadblackhole]

Thanks for your reply, I successfully installed phabox2.I noticed that the software you described can be applied to all viruses 'Generalized for all kinds of viruses',I want to know about all the viruses that include eukaryotes virus?I run the end to end task,and I only find the d__Bacteria and d__Archaea in cherry_prediction.tsv