Update cherry.py

Author: KennthShang

src/phabox2/cherry.py

@@ -174,7 +174,7 @@ def run(inputs):
             SeqIO.write(total_rec, f"{rootpth}/{midfolder}/CRISPRs.fa", 'fasta')
             run_command(f"cp {rootpth}/{midfolder}/CRISPRs.fa {rootpth}/{out_dir}/{supplementary}/CRISPRs_MAGs.fa")
             check_path(os.path.join(rootpth, midfolder, 'crispr_db'))
-            run_command(f'makeblastdb -in {rootpth}/{midfolder}/CRISPRs.fa -dbtype nucl -parse_seqids -out {rootpth}/{midfolder}/crispr_db/magCRISPRs > /dev/null 2>&1')
+            run_command(f'makeblastdb -in {rootpth}/{midfolder}/CRISPRs.fa -dbtype nucl -parse_seqids -out {rootpth}/{midfolder}/crispr_db/magCRISPRs')
 
 
             logger.info(f"[3/{jy}] predicting MAG CRISPRs...")
@@ -722,4 +722,4 @@ def run(inputs):
         phavip_dump_result(genomes, rootpth, out_dir, logger, supplementary = 'cherry_supplementary')
 
 
-    logger.info("Run time: %s seconds\n" % round(time.time() - program_start, 2))
+    logger.info("Run time: %s seconds\n" % round(time.time() - program_start, 2))