diff --git a/src/phabox2/phabox2.py b/src/phabox2/phabox2.py index bfa36b5..48fd183 100644 --- a/src/phabox2/phabox2.py +++ b/src/phabox2/phabox2.py @@ -349,8 +349,8 @@ def main(): parser.add_argument('--tcov', help='Alignment coverage for ANI-based clustering: 0-100 || (default 85)', type=float, default = 85) parser.add_argument('--draw', help='Draw network examples for the query virus relationship: Y or N || (default N)', default = 'N') parser.add_argument('--marker', nargs='+', type=str, help='A list of marker used to generate tree', default=['terl', 'portal']) - parser.add_argument('--mpident', help='Alignment identity for matching marker genes || default: 25 || range from 0 to 100', type=float, default = 75) - parser.add_argument('--mcov', help='Alignment coverage for matching marker genes || default: 70 || range from 0 to 100', type=float, default = 25) + parser.add_argument('--mpident', help='Alignment identity for matching marker genes || default: 25 || range from 0 to 100', type=float, default = 25) + parser.add_argument('--mcov', help='Alignment coverage for matching marker genes || default: 50 || range from 0 to 100', type=float, default = 50) parser.add_argument('--msa', type=str, help='Whether run msa: Y or N ||default N', default='N') parser.add_argument('--tree', type=str, help='Whether build a tree: Y or N ||default N', default='N') inputs = parser.parse_args()