About PDB output

[SYT991]

Thank you for developing the deepDNAshape tool—it's a very useful resource for DNA shape prediction. I’d like to ask if the current version supports outputting predictions in PDB format, or if there’s a recommended workflow to convert the predicted shape parameters (e.g., Roll, Tilt, etc.) into a 3D DNA structure (e.g., for visualization in PyMOL).

If not natively supported, could you suggest tools or scripts (e.g., 3DNA, DSSR, etc.) that might help bridge this gap? Any guidance would be greatly appreciated!

[ychuest]

Thank you for developing the deepDNAshape tool—it's a very useful resource for DNA shape prediction. I’d like to ask if the current version supports outputting predictions in PDB format, or if there’s a recommended workflow to convert the predicted shape parameters (e.g., Roll, Tilt, etc.) into a 3D DNA structure (e.g., for visualization in PyMOL).

If not natively supported, could you suggest tools or scripts (e.g., 3DNA, DSSR, etc.) that might help bridge this gap? Any guidance would be greatly appreciated!

Have you already put your idea into practice? I'd really like to learn more about it.