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ImportError: Regrid requires PIO #83

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tyfolino opened this issue Feb 28, 2020 · 2 comments
Closed

ImportError: Regrid requires PIO #83

tyfolino opened this issue Feb 28, 2020 · 2 comments

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@tyfolino
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tyfolino commented Feb 28, 2020

I'm unable to build a Regridder on Linux os without getting the following error:

ImportError: Regrid(filename) requires PIO and does not work if ESMF has not been built with MPI support

Suspecting a compatibility issue, I created a new python environment and went through the installation again, following the exact lines on the installation page. Running pytest produces the same error code, even with the clean environment.

Thanks for any insight.


$ conda list
# packages in environment at /home/tylerj/miniconda3/envs/xesmf_env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
attrs                     19.3.0                     py_0    conda-forge

backcall 0.1.0 py_0 conda-forge
bleach 3.1.1 py_0 conda-forge
bokeh 1.4.0 py37_0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cartopy 0.17.0 py37h39d8c00_1011 conda-forge
certifi 2019.11.28 py37_0 conda-forge
cffi 1.13.2 py37h8022711_0 conda-forge
cftime 1.0.4.2 py37hc1659b7_0 conda-forge
chardet 3.0.4 py37_1003 conda-forge
click 7.0 py_0 conda-forge
cloudpickle 1.3.0 py_0 conda-forge
cryptography 2.8 py37h72c5cf5_1 conda-forge
curl 7.68.0 hf8cf82a_0 conda-forge
cycler 0.10.0 py_2 conda-forge
cytoolz 0.10.1 py37h516909a_0 conda-forge
dask 2.11.0 py_0 conda-forge
dask-core 2.11.0 py_0 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
distributed 2.11.0 py37_0 conda-forge
entrypoints 0.3 py37_1000 conda-forge
esmf 8.0.0 nompi_he6d0a24_5 conda-forge
esmpy 8.0.0 nompi_py37hf0e99fa_1 conda-forge
expat 2.2.9 he1b5a44_2 conda-forge
fontconfig 2.13.1 he4413a7_1000 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
fsspec 0.6.2 py_0 conda-forge
geos 3.8.0 he1b5a44_0 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
glib 2.58.3 py37h6f030ca_1002 conda-forge
gst-plugins-base 1.14.5 h0935bb2_2 conda-forge
gstreamer 1.14.5 h36ae1b5_2 conda-forge
hdf4 4.2.13 hf30be14_1003 conda-forge
hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge
heapdict 1.0.1 py_0 conda-forge
icu 58.2 hf484d3e_1000 conda-forge
idna 2.9 py_1 conda-forge
importlib_metadata 1.5.0 py37_0 conda-forge
ipykernel 5.1.4 py37h5ca1d4c_0 conda-forge
ipython 7.12.0 py37h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.16.0 py37_0 conda-forge
jinja2 2.11.1 py_0 conda-forge
jpeg 9c h14c3975_1001 conda-forge
json5 0.9.0 py_0 conda-forge
jsonschema 3.2.0 py37_0 conda-forge
jupyter_client 6.0.0 py_0 conda-forge
jupyter_core 4.6.3 py37_0 conda-forge
jupyterlab 2.0.0 py_0 conda-forge
jupyterlab_server 1.0.6 py_0 conda-forge
kiwisolver 1.1.0 py37hc9558a2_0 conda-forge
krb5 1.16.4 h173b8e3_0
ld_impl_linux-64 2.33.1 h53a641e_7
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libcurl 7.68.0 hda55be3_0 conda-forge
libedit 3.1.20181209 hc058e9b_0
libffi 3.2.1 hd88cf55_4
libgcc-ng 9.1.0 hdf63c60_0
libgfortran-ng 7.3.0 hdf63c60_5 conda-forge
libiconv 1.15 h516909a_1005 conda-forge
liblapack 3.8.0 14_openblas conda-forge
libnetcdf 4.7.3 nompi_h9f9fd6a_101 conda-forge
libopenblas 0.3.7 h5ec1e0e_6 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.1.0 hc3755c2_3 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.9 hea5a465_1
locket 0.2.0 py_2 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
markupsafe 1.1.1 py37h516909a_0 conda-forge
matplotlib 3.1.3 py37_0
matplotlib-base 3.1.3 py37hef1b27d_0
mistune 0.8.4 py37h516909a_1000 conda-forge
more-itertools 8.2.0 pypi_0 pypi
msgpack-python 1.0.0 py37hc9558a2_0 conda-forge
nbconvert 5.6.1 py37_0 conda-forge
nbformat 5.0.4 py_0 conda-forge
ncurses 6.2 he6710b0_0
netcdf-fortran 4.5.2 nompi_h09cde99_103 conda-forge
netcdf4 1.5.3 nompi_py37hd35fb8e_102 conda-forge
notebook 6.0.3 py37_0 conda-forge
numpy 1.18.1 py37h95a1406_0 conda-forge
olefile 0.46 py_0 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
owslib 0.19.1 py_0 conda-forge
packaging 20.1 py_0 conda-forge
pandas 1.0.1 py37hb3f55d8_0 conda-forge
pandoc 2.9.2 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.6.1 py_0 conda-forge
partd 1.1.0 py_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pexpect 4.8.0 py37_0 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pillow 7.0.0 py37hb39fc2d_0
pip 20.0.2 py37_1
pluggy 0.13.1 pypi_0 pypi
proj 6.3.1 hc80f0dc_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 3.0.3 py_0 conda-forge
psutil 5.7.0 py37h516909a_0 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
py 1.8.1 pypi_0 pypi
pycparser 2.19 py_2 conda-forge
pyepsg 0.4.0 py_0 conda-forge
pygments 2.5.2 py_0 conda-forge
pykdtree 1.3.1 py37hc1659b7_1002 conda-forge
pyopenssl 19.1.0 py_1 conda-forge
pyparsing 2.4.6 py_0 conda-forge
pyproj 2.5.0 py37he3cd046_1 conda-forge
pyqt 5.9.2 py37hcca6a23_4 conda-forge
pyrsistent 0.15.7 py37h516909a_0 conda-forge
pyshp 2.1.0 py_0 conda-forge
pysocks 1.7.1 py37_0 conda-forge
pytest 5.3.5 pypi_0 pypi
python 3.7.6 h0371630_2
python-dateutil 2.8.1 py_0 conda-forge
pytz 2019.3 py_0 conda-forge
pyyaml 5.3 py37h516909a_0 conda-forge
pyzmq 19.0.0 py37h1768529_0 conda-forge
qt 5.9.7 h52cfd70_2 conda-forge
readline 7.0 h7b6447c_5
requests 2.23.0 py37_0 conda-forge
scipy 1.4.1 py37h921218d_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 45.2.0 py37_0
shapely 1.7.0 py37h5d51c17_0 conda-forge
sip 4.19.8 py37hf484d3e_0
six 1.14.0 py37_0 conda-forge
sortedcontainers 2.1.0 py_0 conda-forge
sqlite 3.31.1 h7b6447c_0
tblib 1.6.0 py_0 conda-forge
terminado 0.8.3 py37_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.8 hbc83047_0
toolz 0.10.0 py_0 conda-forge
tornado 6.0.3 py37h516909a_4 conda-forge
traitlets 4.3.3 py37_0 conda-forge
urllib3 1.25.7 py37_0 conda-forge
wcwidth 0.1.8 py_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.34.2 py37_0
xarray 0.15.0 py_0 conda-forge
xesmf 0.2.2 py_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xz 5.2.4 h14c3975_4
yaml 0.2.2 h516909a_1 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zict 1.0.0 py_0 conda-forge
zipp 3.0.0 py_0 conda-forge
zlib 1.2.11 h7b6447c_3
zstd 1.4.4 h3b9ef0a_1 conda-forge

@JiaweiZhuang
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Should be same as #47 (comment)

@tyfolino
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Awesome, totally fixed it. Didn't find that earlier. Thanks!

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