Error pulling from Docker image: "failed to register layer: failed to Lchown..."

[KrishnaTO]

Attempting to pull ODK fresh from docker, in freshly install Ubuntu

System Info - OS / Docker

Distributor ID: Ubuntu
Description:    Ubuntu 24.04.1 LTS
Release:        24.04
Codename:       noble

docker info
Client: Docker Engine - Community
 Version:    27.4.0
 Context:    rootless
 Debug Mode: false
 Plugins:
  buildx: Docker Buildx (Docker Inc.)
    Version:  v0.19.2
    Path:     /usr/libexec/docker/cli-plugins/docker-buildx
  compose: Docker Compose (Docker Inc.)
    Version:  v2.31.0
    Path:     /usr/libexec/docker/cli-plugins/docker-compose

Server:
 Containers: 1
  Running: 0
  Paused: 0
  Stopped: 1
 Images: 2
 Server Version: 27.4.0
 Storage Driver: overlay2
  Backing Filesystem: extfs
  Supports d_type: true
  Using metacopy: false
  Native Overlay Diff: true
  userxattr: true
 Logging Driver: json-file
 Cgroup Driver: systemd
 Cgroup Version: 2
 Plugins:
  Volume: local
  Network: bridge host ipvlan macvlan null overlay
  Log: awslogs fluentd gcplogs gelf journald json-file local splunk syslog
 Swarm: inactive
 Runtimes: io.containerd.runc.v2 runc
 Default Runtime: runc
 Init Binary: docker-init
 containerd version: 88bf19b2105c8b17560993bee28a01ddc2f97182
 runc version: v1.2.2-0-g7cb3632
 init version: de40ad0
 Security Options:
  seccomp
   Profile: builtin
  rootless
  cgroupns
 Kernel Version: 6.8.0-50-generic
 Operating System: Ubuntu 24.04.1 LTS
 OSType: linux
 Architecture: x86_64
 CPUs: 8
 Total Memory: 31.03GiB
 Name: <server>
 ID: e8eabc16-1ee7-4c98-98ae-ab85247ab408
 Docker Root Dir: /home/<user>/.local/share/docker
 Debug Mode: false
 Experimental: false
 Insecure Registries:
  127.0.0.0/8
 Live Restore Enabled: false

WARNING: No cpuset support
WARNING: No io.weight support
WARNING: No io.weight (per device) support
WARNING: No io.max (rbps) support
WARNING: No io.max (wbps) support
WARNING: No io.max (riops) support
WARNING: No io.max (wiops) support

docker pull obolibrary/odkfull

ran into error:

...
82a34e4214f8: Pull complete 
9ab6a4fa71c3: Pull complete 
e68a9a3111ab: Pull complete 
88216a0585cc: Pull complete 
177271459459: Pull complete 
dd43cf9f7b71: Extracting [==================================================>]  3.816MB/3.816MB
726014107d61: Download complete 
e14b8bb0e65e: Download complete 
cea73b524308: Download complete 
14e311a9640b: Download complete 
failed to register layer: failed to Lchown "/usr/local/lib/node_modules/obographviz/node_modules/underscore/LICENSE" for UID 1119519827, GID 1490099278 (try increasing the number of subordinate IDs in /etc/subuid and /etc/subgid): lchown /usr/local/lib/node_modules/obographviz/node_modules/underscore/LICENSE: invalid argument

Found similar issue from docker upstream here, moby/moby#45757, but wanted to confirm if anyone else is also getting issue.

Thanks

[KrishnaTO]

Update: Able to pull obolibrary/odkfull:v1.5.2, but not after.

[gouttegd]

Re-opening as this is still something that should be fixed in newer images.

I confirm that indeed, in ODK 1.5.4 all files in the obographviz/node_modules/underscore directory have very weird, very large UID and GID:

$ ls -lh /usr/local/lib/node_modules/obographviz/node_modules/underscore
total 112K
-rw-r--r-- 1 1119519827 1490099278 1.1K Dec  4 13:50 LICENSE
-rw-r--r-- 1 1119519827 1490099278 1.2K Dec  4 13:50 README.md
-rw-r--r-- 1 1119519827 1490099278 1.2K Dec  4 13:50 package.json
-rw-r--r-- 1 1119519827 1490099278  17K Dec  4 13:50 underscore-min.js
-rw-r--r-- 1 1119519827 1490099278  27K Dec  4 13:50 underscore-min.map
-rw-r--r-- 1 1119519827 1490099278  52K Dec  4 13:50 underscore.js

I’ll check if there are other files in the same situation and fix them all.