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Keep getting ModuleNotFoundError: No module named 'boto.vendored.six.moves message #29

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Pan1455 opened this issue Sep 9, 2024 · 2 comments

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@Pan1455
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Pan1455 commented Sep 9, 2024

Trying to use portal_client to download files from the HMP using the manifest file but "ModuleNotFoundError: No module named 'boto.vendored.six.moves" error keeps showing up. Turns out boto isn't supported anymore in Python 3.12.5; however, portal_client still needs boto to function. Not sure how to fix this issue and looking for advice.

@SandPadres
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Try just downloading the HMP files with
aws s3 cp s3://hmpdcc/hmp1/hhs/microbiome/wms/analysis/metabolic_prof/humann1_2012/compressed_files/SRS013261_vs_KEGG_v54.tar.bz2 . --no-sign-request
See #27

@field654
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To whomever encounter the same issue,

You may definitely download from AWS, I attempted but failed, since I can't correct coerce the file directory provided by HMP into the AWS form.

I successed by installing the TOPO and six (I'm uncertain whether they are one app or two) under Python 3.9. I have at least downloaded one sample dataset with that setting.

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