Cargo.toml

[package]
name = "extractor"
version = "0.1.0"
edition = "2024"
authors = ["Your Name <your.email@example.com>"]
description = "High-performance biological CSV file filtering library with indexed access support"
repository = "https://github.com/HeartBioPortal/Extractor"
documentation = "https://docs.rs/extractor"
readme = "README.md"
keywords = ["bioinformatics", "csv", "filter", "parallel", "performance"]
categories = ["science", "parser-implementations"]
license = "MIT"

[dependencies]
# Core functionality
csv = "1.3"                    # CSV reading/writing
rayon = "1.8"                  # Parallel processing
memmap2 = "0.9"               # Memory mapping for efficient file I/O
crossbeam-channel = "0.5"     # Channel-based communication

# Serialization
serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0"

# Error handling
thiserror = "1.0"             # Error handling derive macros
anyhow = "1.0"                # Error context and wrapping

# Logging and diagnostics
tracing = "0.1"               # Modern logging framework
tracing-subscriber = "0.3"    # Logging implementation

# Utilities
bytes = "1.5"                 # Efficient byte buffer operations
indicatif = { version = "0.17", optional = true }  # Progress bars
regex = "1.10"               # Regular expressions for pattern matching
itertools = "0.12"           # Iterator utilities
num_cpus = "1.15"           # CPU count detection

[dev-dependencies]
# Testing
criterion = { version = "0.5", features = ["html_reports"] }
tempfile = "3.8"              # Temporary file handling for tests
assert_fs = "1.0"             # Filesystem assertions
predicates = "3.0"            # Test predicates
rstest = "0.18"              # Test case generation
mockall = "0.12"             # Mocking framework
test-log = "0.2"             # Test logging

# Benchmarking
iai = "0.1"                   # Constant-time benchmarking
dhat = "0.3"                  # Heap profiling

[features]
default = ["progress-bars"]
progress-bars = ["dep:indicatif"]
compression = []              # Future support for compressed files
extended-stats = []           # Future support for statistical analysis

[[bench]]
name = "performance_benchmarks"
harness = false

[profile.release]
lto = true                    # Link-time optimization
codegen-units = 1            # Maximize optimization
panic = "abort"              # Remove panic unwinding
opt-level = 3                # Maximum optimization
debug = false                # No debug symbols
strip = true                 # Strip symbols from binary

[profile.dev]
opt-level = 0                # No optimization for faster compilation
debug = true                 # Full debug info

[profile.test]
opt-level = 0                # No optimization for tests
debug = true                 # Full debug info

[package.metadata]
msrv = "1.70.0"              # Minimum supported Rust version