README.md

Melt-Curve Analysis

Basic melting curve analysis in R to differentiate two taxa.

Reproducibility

For full reproducibility we include in this repository our data files and a dockerfile including the raw code. You can either use directly the github project and install the packages by yourself or use the automatically generated docker file.

Docker

For reproducibility there is a automatically generated docker image from this repository Dockerfile.

Docker Run

The globals DOCKER_LOKAL_FILES, MY_GIT_USER, MY_GIT_EMAIL are all optional and can be left empty.

DOCKER_LOKAL_FILES="path/to/lokal/folder"
MY_GIT_USER=""
MY_GIT_EMAIL=""

docker run --rm \
    -v "${DOCKER_LOKAL_FILES}:/home/rstudio/lokal" \
    -e "GIT_EMAIL=${MY_GIT_EMAIL}" \
    -e "GIT_USER=${MY_GIT_USER}" \
    -p 8787:8787 \
    hannesoberreiter/melt_graz

MIT Licence

Copyright (c) 2020 Hannes Oberreiter

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