Initial commit copied from omero-rdf

Author: joshmoore

.gitattributes

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+src/omero_rdf_wd/_version.py export-subst

.github/workflows/omero_plugin.yml

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+# Install and test and OMERO plugin e.g. a Web app, a CLI plugin or a library
+#
+# This workflow will install omero-test-infra, start an OMERO environment
+# including database, server and web deployment, configure the OMERO plugin
+# and run integration tests.
+#
+# 1. Set up the stage variable depending on the plugin. Supported stages
+# are: app, cli, scripts, lib, srv
+#
+# 2. Adjust the cron schedule as necessary
+
+name: OMERO
+on:
+  push:
+  pull_request:
+  schedule:
+    - cron: '0 0 * * 0'
+
+jobs:
+  test:
+    name: Run integration tests against OMERO
+    runs-on: ubuntu-latest
+    env:
+      STAGE: cli
+      PLUGIN: rdf
+    steps:
+      - uses: actions/checkout@v4
+      - name: Checkout omero-test-infra
+        uses: actions/checkout@master
+        with:
+          repository: ome/omero-test-infra
+          path: .omero
+          ref: ${{ secrets.OMERO_TEST_INFRA_REF }}
+      - name: Build and run OMERO tests
+        run: .omero/docker $STAGE

.github/workflows/publish_pypi.yml

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+---
+name: PyPI
+on: push
+
+jobs:
+  build-n-publish:
+    name: Build and publish Python distribution to PyPI
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.9'
+      - name: Build a binary wheel and a source tarball
+        run: |
+          python -mpip install setuptools build wheel
+          python -m build
+      - name: Publish distribution to PyPI
+        if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/[email protected]
+        with:
+          password: ${{ secrets.PYPI_PASSWORD }}

.gitignore

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+build
+dist
+omero-rdf-wd-*
+*.egg*
+.cache
+*.DS_Store
+.*un~
+*.pyc
+.omero
+.*.swp

.isort.cfg

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+[settings]
+known_third_party = entrypoints,omero,omero_marshal,omero_rdf_wd,pyld,rdflib,rdflib_pyld_compat,wikidataintegrator

.pre-commit-config.yaml

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+---
+repos:
+
+  - repo: https://github.com/psf/black
+    rev: 22.12.0
+    hooks:
+      - id: black
+        args: [--target-version=py38]
+
+  - repo: https://github.com/asottile/pyupgrade
+    rev: v2.29.1
+    hooks:
+      - id: pyupgrade
+        args:
+          - --py36-plus
+
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.0.1
+    hooks:
+      - id: trailing-whitespace
+        exclude: .bumpversion.cfg
+      - id: end-of-file-fixer
+      - id: check-json
+        files: \.(json)$
+      - id: check-yaml
+      - id: fix-encoding-pragma
+        args:
+          - --remove
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: pretty-format-json
+        args:
+          - --autofix
+
+  - repo: https://github.com/PyCQA/flake8
+    rev: 4.0.1
+    hooks:
+      - id: flake8
+        additional_dependencies: [
+          flake8-blind-except,
+          flake8-builtins,
+          flake8-rst-docstrings,
+          flake8-logging-format,
+        ]
+        args: [
+          # default black line length is 88
+          "--max-line-length=88",
+          # Conflicts with black: E203 whitespace before ':'
+          "--extend-ignore=E203",
+          "--rst-roles=class,func,ref,module,const",
+        ]
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.7.1
+    hooks:
+      - id: mypy
+        language_version: python3
+
+  - repo: https://github.com/adrienverge/yamllint.git
+    rev: v1.26.3
+    hooks:
+      - id: yamllint
+        # args: [--config-data=relaxed]
+        #

CHANGES.txt

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+=======
+Changes
+=======
+
+0.1 - 2022-07-26
+==================
+* Initial release. Based on https://github.com/ome/cookiecutter-omero-cli-plugin