From ff8f9b968ca86d7fc73781a71efe5862d2c2b340 Mon Sep 17 00:00:00 2001
From: Dan Bolser <dan.bolser@gmail.com>
Date: Mon, 20 Nov 2023 14:33:35 +0000
Subject: [PATCH] adding  to the stats

if you pass options via , they don't show up in the stats, which can be a problem for debugging
---
 modules/Bio/EnsEMBL/VEP/Stats.pm | 1 +
 1 file changed, 1 insertion(+)

diff --git a/modules/Bio/EnsEMBL/VEP/Stats.pm b/modules/Bio/EnsEMBL/VEP/Stats.pm
index 0705115a2..ba4805652 100644
--- a/modules/Bio/EnsEMBL/VEP/Stats.pm
+++ b/modules/Bio/EnsEMBL/VEP/Stats.pm
@@ -645,6 +645,7 @@ sub generate_run_stats {
   my @return = (
     ['Species', $self->species],
     ['Command line options', '<pre>'.join(" ", @opts).'</pre>'],
+    ['Full command line options', '<pre>'.$self->config->{_params}->{full_command}.'</pre>'],
     ['Start time', $self->start_time],
     ['End time', $self->end_time],
     ['Run time', $self->run_time." seconds"],