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The README already provides a simple test command. However, this could be also implemented in the Nextflow version via a test profile. Then, the user can just run
nextflow pull EBI-Metagenomics/emg-viral-pipeline
nextflow run EBI-Metagenomics/emg-viral-pipeline -r v0.4.0 -profile slurm,singularity,test
Here are some examples of such test profile implementations:
https://github.com/hoelzer-lab/rnaflow/
https://github.com/replikation/poreCov
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